Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq11797 580 1e-160 seq17927 500 1e-136 seq14836 98.7 1e-15 seq12403 84.2 3e-11 >seq11797 Length=28381 Score = 580 bits (642), Expect = 1e-160 Identities = 732/1003 (73%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCT 178980 ||||| ||||| || | | |||||| | ||| || | || || | || || ||| Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 178981 CCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 179040 || || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221 Query 179041 ATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATC 179100 || || || ||||| || | || | ||| || || ||| | || || ||||| || Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161 Query 179101 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC 179160 |||||||| ||||| | ||||| ||||| || ||||||||||||| |||| | || Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101 Query 179161 TTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 179220 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041 Query 179221 CTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCA 179280 | ||||||||||| ||||| ||||||||| || || || || || ||||| | |||| Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981 Query 179281 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATC 179340 || ||| | |||||||| | |||||||| || ||||||| ||||||||| || ||| Sbjct 980 GTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 921 Query 179341 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 179400 ||||||||||| |||| |||| |||||||||| || || || ||||| ||||||||||| Sbjct 920 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCA 861 Query 179401 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 179460 || || ||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 860 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 801 Query 179461 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | | || |||| || | ||| || | ||||| || || | || || || | || Sbjct 800 TCTTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| | ||||| ||||||||||| || || ||||| || || || ||||| || || || Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 || ||||||||||||||||| || ||||| || || ||||| || |||||| | || Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 || |||||||| || || || ||||| |||||| | || | || ||||| || || Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 | | || || ||||| |||||||| || | |||| ||||||| ||||| |||| || Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 ||||| || | | |||||||| | |||||||||||||||||||| ||||| || Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442 Query 179820 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCT 179862 ||||||||||| || ||||| |||| || |||| || || || Sbjct 441 TCACAACTTCCCTCTAGACCTAGCTGTTGTTGAGGCTCCATCT 399 >seq17927 Length=56337 Score = 500 bits (554), Expect = 1e-136 Identities = 699/980 (71%), Gaps = 0/980 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| |||| Sbjct 4034 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 4093 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| || || || | || Sbjct 4094 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 4153 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| || ||| | || || || || || || |||||| | | Sbjct 4154 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAATAGT 4213 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | ||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 4214 TTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 4273 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || || |||| ||| || ||||||||||| || ||||| |||| || Sbjct 4274 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 4333 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410 |||||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 4334 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATC 4393 Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470 |||||||||||||| || ||||| ||||| || || || || || ||||| ||||| Sbjct 4394 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAA 4453 Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530 || ||||||||||||| || |||||| ||||| || || ||| |||| | |||||| Sbjct 4454 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCTCTTT 4513 Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 | || || || || || ||||| | ||||| || |||||||||||||| || ||| || Sbjct 4514 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 4573 Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650 || || | || |||||| || || ||||| | ||||| || || || | | |||| Sbjct 4574 CTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 4633 Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710 ||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 4634 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 4693 Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 4694 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 4753 Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || || Sbjct 4754 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 4813 Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890 || | | ||||| ||| | ||||| || || || || || || || || ||| | Sbjct 4814 GGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGT 4873 Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950 ||||| |||||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 4874 GCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGGT 4933 Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 4934 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 4993 Query 181011 GTTCTACCAAGAGGTAACGC 181030 ||||||||| | || ||||| Sbjct 4994 GTTCTACCACGTGGAAACGC 5013 >seq14836 Length=433140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 ||||| |||||| ||| | || ||||| ||||||||||| || |||| | || | Sbjct 174403 TGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTC 174462 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 || ||||| ||||| |||||||| ||||||||||||| ||| | ||||| | | || Sbjct 174463 TCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGAC 174522 Query 177495 CAAAGCGATCAATC-GTTCTTGGATGACGATCAAATGG 177531 || | ||| |||| |||| | ||||| ||||| |||| Sbjct 174523 CAGACAGAT-AATCAGTTCCTTGATGATGATCAGATGG 174559 >seq12403 Length=479826 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 ||||| || ||| || | || || || ||||||||||| ||| ||||| | |||| Sbjct 152746 TGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTAC 152687 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 || ||||| |||||| |||||||| ||||| || ||| | | | ||| ||| ||| Sbjct 152686 TCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGAT 152627 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGT-CAGGATTTATTCTGACCTG 177553 ||| ||||| || || || || || || || |||| ||||| | |||| || || Sbjct 152626 CAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT-GAGTGAAGGATATGTTCTTACTTG 152568 Query 177554 TGTGTCATATCCCAC 177568 ||| | ||||| || Sbjct 152567 TGTAGCGTATCCAAC 152553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610189895554560