Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 190 3e-43
seq14680 136 5e-27
seq16652 122 1e-22
>seq14462
Length=746139
Score = 190 bits (210), Expect = 3e-43
Identities = 403/594 (68%), Gaps = 8/594 (1%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| ||||| || ||||| ||||| || |||| ||||| ||||| || || ||||||
Sbjct 137938 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGT 137879
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAA 39735
|||||||| ||||| || ||||| ||||| || |||| |||| ||| || || |||||
Sbjct 137878 CCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGG-AGCAGAAACTACCGGAGAAGAA 137820
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGT- 39793
||| ||||| || || || || || | | ||||| || || | | | ||
Sbjct 137819 GATACCTTCAACGCAGGCGAAGGCTAC--GATACGCTCCGCAA-AGGTTTGAGATCCGTC 137763
Query 39794 -ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||| || ||||| | |||||||| ||||| || |||||||| || ||
Sbjct 137762 GATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCG 137703
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|||||||| | | |||| | | || || | || ||||| | | |||||||||||
Sbjct 137702 AAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACAT 137643
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| ||||| || || |||||||| || ||||||||||| ||| | || || | |
Sbjct 137642 CTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATAC 137583
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| || || || |||| || | ||| || || || |||||| |||||
Sbjct 137582 CTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGC 137523
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092
|| || || || ||||| || || || | | ||| || | || || | ||| ||
Sbjct 137522 GAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATC 137463
Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152
|| | ||||| ||| ||||| || || ||||||||||||||||| ||||| ||
Sbjct 137462 GCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTT 137403
Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206
|||||| | ||| || | | ||||| || || || ||| |||||| | |||
Sbjct 137402 GTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGG 137349
>seq14680
Length=376954
Score = 136 bits (150), Expect = 5e-27
Identities = 164/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | |||| | || |||||||| |||| ||||||
Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| ||| |||||||| |||| || |||||| || ||
Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || ||| || | |||||| ||| | ||| ||||||||
Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|||||| ||||||||||| |||| | ||||||||||||
Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Score = 127 bits (140), Expect = 3e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | ||||||||||| |||||||||||| ||| ||| | || ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||||| || | || || ||||| || |||||||| | || || | ||||||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
|||||| ||||||| ||| || ||| | | ||||| ||||| ||| |||| |
Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736
Query 70170 AGTTTTAAACCCAAAATAGT 70189
|||||| || || || ||||
Sbjct 229737 AGTTTTGAATCCGAAGTAGT 229756
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/119 (76%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141
|| |||||||||||||| | || || || |||||||| || |||||||| | | | |||
Sbjct 227928 AGGATAAATGCATCTGCAAGACCTTGTACACCAATACCAATTGGTCTATGACGCATGTTT 227987
Query 69142 GAA---CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197
||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||| |||||
Sbjct 227988 GAAGTTCTTGCAGTCTCT---ACAGGATAGTAATTCACATCTATAATCTTATTCAGATT 228043
>seq16652
Length=266037
Score = 122 bits (134), Expect = 1e-22
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831
||||| | ||| | |||| ||||||||| | ||| ||||||||| | ||||| || |||
Sbjct 240171 GCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCATTAGATGTTCCATTAGTACCA 240112
Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891
|||||||||||| |||| ||||| ||| || || | ||| || || || || |
Sbjct 240111 CGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAAACACCAATACCACCAGCTGAT 240052
Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951
|| || | |||||| ||||||||| |||||||| ||||| || ||||||||| ||
Sbjct 240051 TTGCTTATCACAGCACATTCTTTCAATGTTTCATATATCCCCTCGATACTATCATCTTTC 239992
Query 69952 AT 69953
||
Sbjct 239991 AT 239990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686751566575680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |