Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq14462 190 3e-43 seq14680 136 5e-27 seq16652 122 1e-22 >seq14462 Length=746139 Score = 190 bits (210), Expect = 3e-43 Identities = 403/594 (68%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| || ||||| ||||| || |||| ||||| ||||| || || |||||| Sbjct 137938 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGT 137879 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAA 39735 |||||||| ||||| || ||||| ||||| || |||| |||| ||| || || ||||| Sbjct 137878 CCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGG-AGCAGAAACTACCGGAGAAGAA 137820 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGT- 39793 ||| ||||| || || || || || | | ||||| || || | | | || Sbjct 137819 GATACCTTCAACGCAGGCGAAGGCTAC--GATACGCTCCGCAA-AGGTTTGAGATCCGTC 137763 Query 39794 -ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| || ||||| | |||||||| ||||| || |||||||| || || Sbjct 137762 GATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCG 137703 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 |||||||| | | |||| | | || || | || ||||| | | ||||||||||| Sbjct 137702 AAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACAT 137643 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||| || || |||||||| || ||||||||||| ||| | || || | | Sbjct 137642 CTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATAC 137583 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || || || || |||| || | ||| || || || |||||| ||||| Sbjct 137582 CTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGC 137523 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 || || || || ||||| || || || | | ||| || | || || | ||| || Sbjct 137522 GAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATC 137463 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 || | ||||| ||| ||||| || || ||||||||||||||||| ||||| || Sbjct 137462 GCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTT 137403 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||| | ||| || | | ||||| || || || ||| |||||| | ||| Sbjct 137402 GTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGG 137349 >seq14680 Length=376954 Score = 136 bits (150), Expect = 5e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | |||| | || |||||||| |||| |||||| Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || |||||| || || Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||| ||||||||||| |||| | |||||||||||| Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | ||||||||||| |||||||||||| ||| ||| | || || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| || | || || ||||| || |||||||| | || || | |||||| Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| ||||||| ||| || ||| | | ||||| ||||| ||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736 Query 70170 AGTTTTAAACCCAAAATAGT 70189 |||||| || || || |||| Sbjct 229737 AGTTTTGAATCCGAAGTAGT 229756 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || |||||||||||||| | || || || |||||||| || |||||||| | | | ||| Sbjct 227928 AGGATAAATGCATCTGCAAGACCTTGTACACCAATACCAATTGGTCTATGACGCATGTTT 227987 Query 69142 GAA---CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||| ||||| Sbjct 227988 GAAGTTCTTGCAGTCTCT---ACAGGATAGTAATTCACATCTATAATCTTATTCAGATT 228043 >seq16652 Length=266037 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||| | ||| | |||| ||||||||| | ||| ||||||||| | ||||| || ||| Sbjct 240171 GCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCATTAGATGTTCCATTAGTACCA 240112 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||||||||| |||| ||||| ||| || || | ||| || || || || | Sbjct 240111 CGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAAACACCAATACCACCAGCTGAT 240052 Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951 || || | |||||| ||||||||| |||||||| ||||| || ||||||||| || Sbjct 240051 TTGCTTATCACAGCACATTCTTTCAATGTTTCATATATCCCCTCGATACTATCATCTTTC 239992 Query 69952 AT 69953 || Sbjct 239991 AT 239990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686751566575680