Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14413 122 7e-23 seq14499 107 2e-18 seq16023 104 2e-17 seq16726 100 2e-16 seq17130 98.7 8e-16 >seq14413 Length=739167 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| || | ||||| || | || || || || || || |||||||| ||| Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || || | || |||||||||||||||||| | || || | ||| || ||||| || Sbjct 402914 AGAGTA-CGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGG 402972 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||||||| ||||| ||| | | || | ||||||| | ||||| Sbjct 402973 GATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 403032 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || | ||| || || |||||||||||||||||||||||| Sbjct 403033 TTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||| || | | |||| | |||||||||||||| || Sbjct 402428 GTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 402487 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||| || || ||||| || | |||||| || || ||||| ||| Sbjct 402488 GCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTAGCTTTT 402547 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| | |||||||||||||| || | |||||| || || || Sbjct 402548 ACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTC 402607 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| || |||||| Sbjct 402608 TTTACAAAAATCTGCATA 402625 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || |||||||| | | || | || ||||||||||||||| Sbjct 404157 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 404216 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || ||||| || | ||||| || || ||||||| || Sbjct 404217 GCAAAGATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 404276 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| | || || || ||||| || | ||||| || || ||| Sbjct 404277 ACATTATCGATGGTGTCTGAGCTCTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTT 404336 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 404337 TTCACGAAGATTTGCAT 404353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || |||||||| | | |||| | || ||||||||||||||| Sbjct 403340 GTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGTTTACCG 403399 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | || || ||||| || | ||||| || || |||||| || Sbjct 403400 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 403459 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | ||| || || ||||| Sbjct 403460 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 403519 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 403520 TTGACGAAGATTTGCATA 403537 >seq14499 Length=662897 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| ||||| | || || || ||||| || |||||||| | | | || Sbjct 223718 AAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGA 223777 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 |||| |||||||||||||| ||| | ||||| | |||||||| || || | || ||| Sbjct 223778 CCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGGATCCCTTCT 223837 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || ||||| || | | | || | ||||| | | || |||||||| || Sbjct 223838 TTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCTAGGGTG 223897 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| || |||||||| || |||||||||||| Sbjct 223898 ATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || || ||||| |||||||| ||| | | | || | |||||| Sbjct 223955 ACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAAGGTACGGCCATCTTCG 224014 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| | || || | ||| ||||| || || | || || || || | Sbjct 224015 AGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGG 224074 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | ||||||| | ||||| || ||||| || | |||| Sbjct 224075 ATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACCTCGAGAGTGATGGTTTTG 224134 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| || |||||||||||| Sbjct 224135 CCAGTGAGGGTTTTTACGAAGATTTGCATA 224164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || ||||||||||| || | | || | Sbjct 223493 CGCAGGACCAGGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCGGCCA 223552 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| |||||| | || || | ||| || ||||| || | ||| ||||| Sbjct 223553 TCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTG 223612 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | || | ||||||| | ||||||||| | |||||| Sbjct 223613 TCTTGGATCTTAGCCTTTACATTATCGATGGTGTCTGAGCTTTCAACTTCCAAAGTTATG 223672 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| || || ||||| || || || |||||| Sbjct 223673 GTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCATA 223708 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||| ||| | | | || | |||||||||||||| ||| Sbjct 224195 GTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTACGGCCATCTTCGAGCTGTTTGCCG 224254 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| || || || || | || || || || |||||| || Sbjct 224255 GCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTG 224314 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | ||||| || |||||| Sbjct 224315 ACATTATCGATGGTGTCGGAGCTCTCCACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTT 224374 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAA 27258 ||||| ||||||||||| ||| ||||| Sbjct 224375 TTCACGAAGATTTGCAT--CTGGTAAAA 224400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 |||| |||| || | || || || ||||| ||||||||||| ||| | | | || | Sbjct 223265 CGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCAGCT-AAGGTACGGCC 223323 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||| |||||||| |||||| | ||||| | || || || || || | ||| ||||| Sbjct 223324 ATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTT 223383 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || |||||| ||| | | || | ||||| | | ||||||||||| || || Sbjct 223384 GTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGAT 223443 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || ||||| || || || |||||| Sbjct 223444 GGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCATA 223480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||||||| || || | | || | ||||| |||||||| ||| Sbjct 223055 GTCGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCG 223114 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| || ||||| || | ||| |||||||| |||||| |||| Sbjct 223115 GCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTGGATCTTTGCTTTC 223174 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| || | | ||||||||||| || || | ||| || |||| || Sbjct 223175 ACATTATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTTTACCGGTCAATGTC 223234 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| || |||||| Sbjct 223235 TTAACAAAAATCTGCATA 223252 >seq16023 Length=121467 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || ||||| || || |||||||| || | | || |||| ||| Sbjct 25317 ACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCCTCG 25376 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| | || | | ||| || ||||| || | ||| || ||||| | Sbjct 25377 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 25436 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||||| || | || || | ||| Sbjct 25437 ATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTAATCGTCTTG 25496 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || ||||| || |||||||||||| Sbjct 25497 CCCGTTAGGGTTTTGACGAAGATTTGCATA 25526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| |||||||| | | |||| | || || Sbjct 24405 ACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCA 24464 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | ||| || || || | Sbjct 24465 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 24524 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | |||| ||||| | | || ||||| || || || | || Sbjct 24525 ATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGGTCTTA 24584 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || ||||| || |||||| Sbjct 24585 CCGGTCAAGGTCTTAACAAAAATCTGCATA 24614 >seq16726 Length=336357 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTAC 27108 ||| || || || || ||||||||||| ||| | | |||| | || |||||||| || | Sbjct 61312 CGTTGACTCCTTCTGGATATTGTAGTCAGCTAAAG-TGCGTCCATCCTCGAGCTGCTTTC 61254 Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 ||||| |||| | ||||| || ||||| || | || || || || ||||||| | Sbjct 61253 CGGCGAAAATCAATCGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 61194 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 | | | || | ||||| | || ||| || || ||||| |||| || ||||| || | Sbjct 61193 TGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGAGTGATAGTCTTCCCCGTTAGGG 61134 Query 27229 TTTTCACAAAGATTTGCAT 27247 ||||||| ||||| ||||| Sbjct 61133 TTTTCACGAAGATCTGCAT 61115 >seq17130 Length=165301 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | || || | || ||||| | || || || || || |||||||| || ||| Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || ||||||| || ||||| |||||| |||| | || || || ||||| || Sbjct 19727 AATGTCCTGC-CGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGG 19785 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || |||||| ||| | | || | || || | | |||||| Sbjct 19786 GATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| ||||| ||||||||||| ||||| ||||| Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424839564202944