Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq14413 122 7e-23
seq14499 107 2e-18
seq16023 104 2e-17
seq16726 100 2e-16
seq17130 98.7 8e-16
>seq14413
Length=739167
Score = 122 bits (134), Expect = 7e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
|| || | ||| || | ||||| || | || || || || || || |||||||| |||
Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| || | || |||||||||||||||||| | || || | ||| || ||||| ||
Sbjct 402914 AGAGTA-CGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGG 402972
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||||||||| ||||| ||| | | || | ||||||| | |||||
Sbjct 402973 GATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 403032
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||| || || | ||| || || ||||||||||||||||||||||||
Sbjct 403033 TTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| ||||| || | | |||| | |||||||||||||| ||
Sbjct 402428 GTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 402487
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || | ||| || || ||||| || | |||||| || || ||||| |||
Sbjct 402488 GCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTAGCTTTT 402547
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| | |||||||||||||| || | |||||| || || ||
Sbjct 402548 ACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTC 402607
Query 27231 TTCACAAAGATTTGCATA 27248
|| ||||| || ||||||
Sbjct 402608 TTTACAAAAATCTGCATA 402625
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || ||||| || |||||||| | | || | || |||||||||||||||
Sbjct 404157 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 404216
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| || ||||| || | ||||| || || ||||||| ||
Sbjct 404217 GCAAAGATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 404276
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| | || || || ||||| || | ||||| || || |||
Sbjct 404277 ACATTATCGATGGTGTCTGAGCTCTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTT 404336
Query 27231 TTCACAAAGATTTGCAT 27247
||||| |||||||||||
Sbjct 404337 TTCACGAAGATTTGCAT 404353
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || |||||||| || |||||||| | | |||| | || |||||||||||||||
Sbjct 403340 GTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGTTTACCG 403399
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | || || ||||| || | ||||| || || |||||| ||
Sbjct 403400 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 403459
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | || || || ||||| || | ||| || || |||||
Sbjct 403460 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 403519
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||||||||||
Sbjct 403520 TTGACGAAGATTTGCATA 403537
>seq14499
Length=662897
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089
|| || | ||| ||||| | || || || ||||| || |||||||| | | | ||
Sbjct 223718 AAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGA 223777
Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149
|||| |||||||||||||| ||| | ||||| | |||||||| || || | || |||
Sbjct 223778 CCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGGATCCCTTCT 223837
Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209
|| || ||||| || | | | || | ||||| | | || |||||||| ||
Sbjct 223838 TTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCTAGGGTG 223897
Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | |||||| || |||||||| || ||||||||||||
Sbjct 223898 ATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| |||| || || || ||||| |||||||| ||| | | | || | ||||||
Sbjct 223955 ACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAAGGTACGGCCATCTTCG 224014
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| ||||| || ||| | || || | ||| ||||| || || | || || || || |
Sbjct 224015 AGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGG 224074
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| ||| | | || | ||||||| | ||||| || ||||| || | ||||
Sbjct 224075 ATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACCTCGAGAGTGATGGTTTTG 224134
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || ||||| || ||||||||||||
Sbjct 224135 CCAGTGAGGGTTTTTACGAAGATTTGCATA 224164
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| |||| || | || || || || ||||||||||| || | | || |
Sbjct 223493 CGCAGGACCAGGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCGGCCA 223552
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| |||||||| |||||| | || || | ||| || ||||| || | ||| |||||
Sbjct 223553 TCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTG 223612
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| |||||| || | | || | ||||||| | ||||||||| | ||||||
Sbjct 223613 TCTTGGATCTTAGCCTTTACATTATCGATGGTGTCTGAGCTTTCAACTTCCAAAGTTATG 223672
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| || || ||||| || || || ||||||
Sbjct 223673 GTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCATA 223708
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || |||||||||||||| ||| | | | || | |||||||||||||| |||
Sbjct 224195 GTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTACGGCCATCTTCGAGCTGTTTGCCG 224254
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || | ||| || || || || | || || || || |||||| ||
Sbjct 224255 GCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTG 224314
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | || || || ||||| || | ||||| || ||||||
Sbjct 224315 ACATTATCGATGGTGTCGGAGCTCTCCACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTT 224374
Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAA 27258
||||| ||||||||||| ||| |||||
Sbjct 224375 TTCACGAAGATTTGCAT--CTGGTAAAA 224400
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091
|||| |||| || | || || || ||||| ||||||||||| ||| | | | || |
Sbjct 223265 CGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCAGCT-AAGGTACGGCC 223323
Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151
||||| |||||||| |||||| | ||||| | || || || || || | ||| |||||
Sbjct 223324 ATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTT 223383
Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211
|| |||||| ||| | | || | ||||| | | ||||||||||| || ||
Sbjct 223384 GTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGAT 223443
Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||| || || || ||||| || || || ||||||
Sbjct 223444 GGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCATA 223480
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| |||||||| || || | | || | ||||| |||||||| |||
Sbjct 223055 GTCGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCG 223114
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | | ||| || ||||| || | ||| |||||||| |||||| ||||
Sbjct 223115 GCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTGGATCTTTGCTTTC 223174
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||| || | | ||||||||||| || || | ||| || |||| ||
Sbjct 223175 ACATTATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTTTACCGGTCAATGTC 223234
Query 27231 TTCACAAAGATTTGCATA 27248
|| ||||| || ||||||
Sbjct 223235 TTAACAAAAATCTGCATA 223252
>seq16023
Length=121467
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||| || ||||| || || |||||||| || | | || |||| |||
Sbjct 25317 ACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCCTCG 25376
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||| ||| | || | | ||| || ||||| || | ||| || ||||| |
Sbjct 25377 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 25436
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| ||| | | | || | ||||| | | ||||| || | || || | |||
Sbjct 25437 ATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTAATCGTCTTG 25496
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||||| || ||||| || ||||||||||||
Sbjct 25497 CCCGTTAGGGTTTTGACGAAGATTTGCATA 25526
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || |||||||| |||||||| | | |||| | || ||
Sbjct 24405 ACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCA 24464
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || ||| | ||||||||||| || ||||| || | ||| || || || |
Sbjct 24465 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 24524
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| |||| | | |||| ||||| | | || ||||| || || || | ||
Sbjct 24525 ATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGGTCTTA 24584
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| |||| || || ||||| || ||||||
Sbjct 24585 CCGGTCAAGGTCTTAACAAAAATCTGCATA 24614
>seq16726
Length=336357
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTAC 27108
||| || || || || ||||||||||| ||| | | |||| | || |||||||| || |
Sbjct 61312 CGTTGACTCCTTCTGGATATTGTAGTCAGCTAAAG-TGCGTCCATCCTCGAGCTGCTTTC 61254
Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168
||||| |||| | ||||| || ||||| || | || || || || ||||||| |
Sbjct 61253 CGGCGAAAATCAATCGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 61194
Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228
| | | || | ||||| | || ||| || || ||||| |||| || ||||| || |
Sbjct 61193 TGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGAGTGATAGTCTTCCCCGTTAGGG 61134
Query 27229 TTTTCACAAAGATTTGCAT 27247
||||||| ||||| |||||
Sbjct 61133 TTTTCACGAAGATCTGCAT 61115
>seq17130
Length=165301
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
||||| | || || | || ||||| | || || || || || |||||||| || |||
Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|||| || ||||||| || ||||| |||||| |||| | || || || ||||| ||
Sbjct 19727 AATGTCCTGC-CGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGG 19785
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||| || || || |||||| ||| | | || | || || | | ||||||
Sbjct 19786 GATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | ||| ||||| ||||||||||| ||||| |||||
Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424839564202944
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