Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq16580 123 3e-23 seq17304 104 3e-17 seq14462 100 4e-16 >seq16580 Length=224205 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | | || || || |||| || | |||||| || | | ||||| Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTTACCCTCAAAC 139807 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 139808 CCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 139864 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | ||| | || || || || || ||||| | |||||||| ||| Sbjct 139865 CCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATGCAT 139924 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || |||||| ||| | | || ||||| || |||||| |||||| ||||||||| Sbjct 139925 GGAGCATTTTCCTTGGCTTTCTTGAAAAGATCACGGACCCTTGAGGCACCAACACCAACA 139984 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| || || | | ||||| || ||| || ||| | |||||| || Sbjct 139985 AACATCTCAACGAACTCGGAACCAGAGATAGAGAAGAAAGGTACACCAGCTTCACCAGCA 140044 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | ||||| ||||| ||||| || ||| || || | ||| Sbjct 140045 ATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACACCTTTT 140104 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||||| ||||||| | || |||| ||||| | ||| ||||| || || Sbjct 140105 GGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTAC 140157 >seq17304 Length=552903 Score = 104 bits (114), Expect = 3e-17 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||| ||||| |||||||| |||||| | Sbjct 425680 AAAACCATCCATTTCTGTTAACAACTGATTAATCGTTTGCTCTCTCTCGTCATTTCCA-- 425737 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | || | || || |||||||||||||| ||||| ||||| Sbjct 425738 CCTCCCATTCCAGCTCCTCTCTGTCTTCCAACAGCATCAATCTCATCTATGAACACAATG 425797 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || |||| | ||| | ||||| | ||| | ||| || ||||| ||||| Sbjct 425798 CACGG-TGCTTTTGACTTGGCTTTCTCAAACAAATCCCTAACTCTAGACGCACCTACACC 425856 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||| || | |||||| || | | || | || || ||| || || || ||| || Sbjct 425857 AACGAAAAGCTCCACGAACTCGGACGCTGCACAAGAGAAGAACGGTACTCCTGCTTCTCC 425916 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || ||||| || |||||||| Sbjct 425917 AGCTACAGCTCTAGCTAAAAGAGTCTTACCAGTACCTGG 425955 >seq14462 Length=746139 Score = 100 bits (110), Expect = 4e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||| || || ||||| || || | || || |||||| || || ||||||||||| Sbjct 137923 TGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCT 137864 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || || || | ||| |||| | |||||| ||||||||||||||||| || || || Sbjct 137863 CGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAG 137804 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 || || || | | || || || |||| |||| | | || | ||| |||| ||| Sbjct 137803 GCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCC 137747 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| ||| ||||| ||| ||| || | |||| ||| || Sbjct 137746 CATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGC 137706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627888243475200