Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 129 7e-25
seq15261 87.8 2e-12
>seq14462
Length=746139
Score = 129 bits (142), Expect = 7e-25
Identities = 388/588 (66%), Gaps = 17/588 (3%)
Strand=Plus/Minus
Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087
||||| || ||||| || ||||| | || || |||||| || || |||||||||||
Sbjct 137923 TGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCT 137864
Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147
|| || || | ||||||||| | || || || ||||||||||| || || || ||
Sbjct 137863 CGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAG 137804
Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207
||||| || | || |||||| ||||||| | || | || | ||| ||||||||
Sbjct 137803 GCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCC 137747
Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTT 130266
|| ||||| || || | | |||||||| || | ||| || |||||| | | ||||
Sbjct 137746 CATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGATGGTCTCTT 137687
Query 130267 T-TCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--ATGGAC 130323
| | || || || |||||||| |||| | || | || ||| || || ||| |
Sbjct 137686 TCTTTGTTG--TCCTTGATGTAGGTATCAAGAAG--TAGACTATACATCTCCGAATGAAT 137631
Query 130324 CATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 130383
| ||| | | ||| | ||||||||| ||||| || || ||| | ||||
Sbjct 137630 ATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATACCTGAA---CATC 137574
Query 130384 TG-CA-AAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440
| || ||| | || | |||||| || || || ||||| || | || || || ||
Sbjct 137573 GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGAAGAAGGC 137514
Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500
| || || ||| ||||| | |||| ||||| | ||| ||| ||| ||
Sbjct 137513 TAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATCGCGTCCGTC 137454
Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560
|| || ||||| || ||||| ||||||||| | | |||||||| || | ||
Sbjct 137453 CTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTTGTACATCTC 137394
Query 130561 CCAGAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 130608
||||| || || || | | ||||||| |||||||| | ||||
Sbjct 137393 CCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGT 137346
>seq15261
Length=284138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984
|||||||||||| |||||||||| ||||| || ||| || || |||||||||||||||
Sbjct 55051 AATTACCGAGAAGCCTATGGTCTGTTTGCCTGTAATGGAATACTGTTCAACCACGAGTCA 55110
Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022
|| || || ||| | | |||||||| | ||| || ||
Sbjct 55111 CCACGCCGGGGCGAGAACTTCGTGACCAGGAAAATAAC 55148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618293640182720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |