Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14462 129 7e-25 seq15261 87.8 2e-12 >seq14462 Length=746139 Score = 129 bits (142), Expect = 7e-25 Identities = 388/588 (66%), Gaps = 17/588 (3%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 ||||| || ||||| || ||||| | || || |||||| || || ||||||||||| Sbjct 137923 TGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCT 137864 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || || || | ||||||||| | || || || ||||||||||| || || || || Sbjct 137863 CGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAG 137804 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 ||||| || | || |||||| ||||||| | || | || | ||| |||||||| Sbjct 137803 GCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCC 137747 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTT 130266 || ||||| || || | | |||||||| || | ||| || |||||| | | |||| Sbjct 137746 CATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGATGGTCTCTT 137687 Query 130267 T-TCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--ATGGAC 130323 | | || || || |||||||| |||| | || | || ||| || || ||| | Sbjct 137686 TCTTTGTTG--TCCTTGATGTAGGTATCAAGAAG--TAGACTATACATCTCCGAATGAAT 137631 Query 130324 CATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 130383 | ||| | | ||| | ||||||||| ||||| || || ||| | |||| Sbjct 137630 ATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATACCTGAA---CATC 137574 Query 130384 TG-CA-AAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | || ||| | || | |||||| || || || ||||| || | || || || || Sbjct 137573 GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGAAGAAGGC 137514 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500 | || || ||| ||||| | |||| ||||| | ||| ||| ||| || Sbjct 137513 TAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATCGCGTCCGTC 137454 Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560 || || ||||| || ||||| ||||||||| | | |||||||| || | || Sbjct 137453 CTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTTGTACATCTC 137394 Query 130561 CCAGAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 130608 ||||| || || || | | ||||||| |||||||| | |||| Sbjct 137393 CCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGT 137346 >seq15261 Length=284138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||||||||| |||||||||| ||||| || ||| || || ||||||||||||||| Sbjct 55051 AATTACCGAGAAGCCTATGGTCTGTTTGCCTGTAATGGAATACTGTTCAACCACGAGTCA 55110 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022 || || || ||| | | |||||||| | ||| || || Sbjct 55111 CCACGCCGGGGCGAGAACTTCGTGACCAGGAAAATAAC 55148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618293640182720