Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 150 2e-31
seq16580 109 6e-19
seq17304 98.7 1e-15
>seq14462
Length=746139
Score = 150 bits (166), Expect = 2e-31
Identities = 401/604 (66%), Gaps = 13/604 (2%)
Strand=Plus/Plus
Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404
|| || || || |||| || | | |||||||| | ||||||| | | || |||||
Sbjct 137328 GAGCCGCTTCTTACCCCAACCCCAGACAGATTTTGTATGTTCCCGATTCAATACCCACAG 137387
Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTC 94464
||||||| | || |||||||| | | ||||||||| || || || |||||
Sbjct 137388 ATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTA 137447
Query 94465 TCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 94522
||| |||| ||||| ||||| ||| | |||| || ||| | ||||| ||
Sbjct 137448 TCACAGGAC--GGACGCGATTGGGAGAATTTAAACGACGGCGAACGACACTTCATCAAGC 137505
Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCA-ATAACAAC 94581
| || | || ||||| || | || ||||| || || || |||||| | || | |
Sbjct 137506 ATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCTTGCATCTCGA- 137564
Query 94582 TTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAA 94640
|| || || || || || || ||| | | ||||| | | ||| |
Sbjct 137565 -TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGCTTTCTACGGATTTCAAATCGCGAT 137623
Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700
||| | | ||| ||||| || ||| ||| | || | || || |||||
Sbjct 137624 TGAGAATATTCATTCGGAGATGTATAGTCTACTTCTTGATACCTACATCAAGGACAACAA 137683
Query 94701 TGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGG 94759
|| |||| | || |||||| || ||| ||||| | |||||| || |||||||||
Sbjct 137684 AGA-AAGAGACCATCTCTTTCGCGCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGC 137742
Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819
| ||||| |||| ||| | || | || | ||||||| ||||| || | || |
Sbjct 137743 AATGGGCGATGACTTGGATCGACGGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCT 137799
Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879
| || || ||||| |||||||||||||| ||| |||||| | |||| ||||| || |
Sbjct 137800 TCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAA 137859
Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 94939
| |||||||||||||| || ||| ||||||||||||| | ||||| || ||||| || |
Sbjct 137860 AACGAGGTCTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCC 137919
Query 94940 TCCA 94943
||||
Sbjct 137920 TCCA 137923
>seq16580
Length=224205
Score = 109 bits (120), Expect = 6e-19
Identities = 304/460 (66%), Gaps = 10/460 (2%)
Strand=Plus/Plus
Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616
|| || ||||| | | || || || || | |||| ||| ||||| | | |||||
Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTTACCCTCAAAC 139807
Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676
||||||||||| |||| || || || | ||| ||||| | ||||||||| || |
Sbjct 139808 CCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---CCA 139864
Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733
||| || | | | ||| | || || || || || ||||| | ||||| ||||||
Sbjct 139865 CCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATGCAT 139924
Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792
|| |||||| || ||| ||| ||||| || || | ||| || ||||||||
Sbjct 139925 GGAGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCTTGAGGCACCAACACCAAC 139983
Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851
||||||||| || || | | | | | || | || ||| || ||| || |||||| |
Sbjct 139984 AAACATCTCAACGAACTCGGAACCAG-AGATAGAGAAGAAAGGTACACCAGCTTCACCAG 140042
Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911
|||| ||| || | ||| || || || ||||| || ||| ||||| |||||
Sbjct 140043 CAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACACCTT 140102
Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971
||| ||| ||| ||| | || | |||| || || | ||| ||||| || || | ||
Sbjct 140103 TTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTACCACTT 140162
Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011
| || || | ||||| | |||| || |||||||
Sbjct 140163 CCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATC 140202
>seq17304
Length=552903
Score = 98.7 bits (108), Expect = 1e-15
Identities = 305/464 (66%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|||||||| | || || | ||| || || |||||| | |||| | || || ||
Sbjct 425591 CGATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCA 425650
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|| | || | || ||||| | | |||||||||||| ||||| || | || |||
Sbjct 425651 GCCAATACTATAACACCTGAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701
|| ||||| || | || ||||| | | | ||| ||||| | | || |||| |
Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCCA--CCTCCCATTCCAGCTCCTCTCTGTCTTCCAA 425768
Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC-GAGCGACTTCAAAG 9760
| |||||||||||||| ||||| || ||||| || || |||| | || |||||
Sbjct 425769 CAGCATCAATCTCATCTATGAACACAATGCACGG-TGCTTTTGACTTGGCTTTCTCAAAC 425827
Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
| ||||| || || || | || || |||||||| || | |||||| || | | || |
Sbjct 425828 AAATCCC-TA-ACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGACGCTG 425885
Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878
||| || ||| || || | ||| || || | |||| || | |||||||||||
Sbjct 425886 CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGTCTTAC 425945
Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938
| |||||||| || | || | ||| ||||||||| || || | | ||
Sbjct 425946 CAGTACCTGGTGGTCCTACCAGTAAACATCCTTTTGGAATCTTAGCACCTAGTGCTGTGT 426005
Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCA 9982
| | || || | ||| | |||||||| | ||||| ||||||
Sbjct 426006 ACTTATCTGGATTCTTCAAGAAATCCACTACTTCTTGTAATTCA 426049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583127291602880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |