Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14462 150 2e-31 seq16580 109 6e-19 seq17304 98.7 1e-15 >seq14462 Length=746139 Score = 150 bits (166), Expect = 2e-31 Identities = 401/604 (66%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 || || || || |||| || | | |||||||| | ||||||| | | || ||||| Sbjct 137328 GAGCCGCTTCTTACCCCAACCCCAGACAGATTTTGTATGTTCCCGATTCAATACCCACAG 137387 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTC 94464 ||||||| | || |||||||| | | ||||||||| || || || ||||| Sbjct 137388 ATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTA 137447 Query 94465 TCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 94522 ||| |||| ||||| ||||| ||| | |||| || ||| | ||||| || Sbjct 137448 TCACAGGAC--GGACGCGATTGGGAGAATTTAAACGACGGCGAACGACACTTCATCAAGC 137505 Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCA-ATAACAAC 94581 | || | || ||||| || | || ||||| || || || |||||| | || | | Sbjct 137506 ATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCTTGCATCTCGA- 137564 Query 94582 TTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAA 94640 || || || || || || || ||| | | ||||| | | ||| | Sbjct 137565 -TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGCTTTCTACGGATTTCAAATCGCGAT 137623 Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700 ||| | | ||| ||||| || ||| ||| | || | || || ||||| Sbjct 137624 TGAGAATATTCATTCGGAGATGTATAGTCTACTTCTTGATACCTACATCAAGGACAACAA 137683 Query 94701 TGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGG 94759 || |||| | || |||||| || ||| ||||| | |||||| || ||||||||| Sbjct 137684 AGA-AAGAGACCATCTCTTTCGCGCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGC 137742 Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 | ||||| |||| ||| | || | || | ||||||| ||||| || | || | Sbjct 137743 AATGGGCGATGACTTGGATCGACGGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCT 137799 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || || ||||| |||||||||||||| ||| |||||| | |||| ||||| || | Sbjct 137800 TCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAA 137859 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 94939 | |||||||||||||| || ||| ||||||||||||| | ||||| || ||||| || | Sbjct 137860 AACGAGGTCTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCC 137919 Query 94940 TCCA 94943 |||| Sbjct 137920 TCCA 137923 >seq16580 Length=224205 Score = 109 bits (120), Expect = 6e-19 Identities = 304/460 (66%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | | || || || || | |||| ||| ||||| | | ||||| Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTTACCCTCAAAC 139807 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| |||| || || || | ||| ||||| | ||||||||| || | Sbjct 139808 CCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---CCA 139864 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | ||| | || || || || || ||||| | ||||| |||||| Sbjct 139865 CCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATGCAT 139924 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || |||||| || ||| ||| ||||| || || | ||| || |||||||| Sbjct 139925 GGAGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCTTGAGGCACCAACACCAAC 139983 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| || || | | | | | || | || ||| || ||| || |||||| | Sbjct 139984 AAACATCTCAACGAACTCGGAACCAG-AGATAGAGAAGAAAGGTACACCAGCTTCACCAG 140042 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 140043 CAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACACCTT 140102 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 ||| ||| ||| ||| | || | |||| || || | ||| ||||| || || | || Sbjct 140103 TTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTACCACTT 140162 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||||| | |||| || ||||||| Sbjct 140163 CCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATC 140202 >seq17304 Length=552903 Score = 98.7 bits (108), Expect = 1e-15 Identities = 305/464 (66%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | || || | ||| || || |||||| | |||| | || || || Sbjct 425591 CGATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCA 425650 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||||| | | |||||||||||| ||||| || | || ||| Sbjct 425651 GCCAATACTATAACACCTGAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 || ||||| || | || ||||| | | | ||| ||||| | | || |||| | Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCCA--CCTCCCATTCCAGCTCCTCTCTGTCTTCCAA 425768 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC-GAGCGACTTCAAAG 9760 | |||||||||||||| ||||| || ||||| || || |||| | || ||||| Sbjct 425769 CAGCATCAATCTCATCTATGAACACAATGCACGG-TGCTTTTGACTTGGCTTTCTCAAAC 425827 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | ||||| || || || | || || |||||||| || | |||||| || | | || | Sbjct 425828 AAATCCC-TA-ACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGACGCTG 425885 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 ||| || ||| || || | ||| || || | |||| || | ||||||||||| Sbjct 425886 CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGTCTTAC 425945 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | |||||||| || | || | ||| ||||||||| || || | | || Sbjct 425946 CAGTACCTGGTGGTCCTACCAGTAAACATCCTTTTGGAATCTTAGCACCTAGTGCTGTGT 426005 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCA 9982 | | || || | ||| | |||||||| | ||||| |||||| Sbjct 426006 ACTTATCTGGATTCTTCAAGAAATCCACTACTTCTTGTAATTCA 426049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583127291602880