Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14462 93.3 5e-14 seq16938 89.7 6e-13 seq12268 89.7 6e-13 seq16000 86.0 7e-12 seq14883 86.0 7e-12 seq14079 86.0 7e-12 seq13031 86.0 7e-12 >seq14462 Length=746139 Score = 93.3 bits (102), Expect = 5e-14 Identities = 350/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||| || || || || || || | || |||||||| || || || || Sbjct 137918 GCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCTCGTTT 137859 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| || |||| ||||| ||| ||||||||| ||||| || || || || Sbjct 137858 TTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAGGCGAA 137799 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCA--TCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945 ||| || | || | ||| || | | | || | | ||||||||| ||||||| Sbjct 137798 GGCTACGATACGCTCCGCAAAGGTTTGAGATCCGTCG--ATCCAAGTCATCGCCCATTGC 137741 Query 74946 GCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT-TCTCTT 75003 ||||| | | | | || |||| || ||||| || | ||||| | | || | |||| Sbjct 137740 GCTTT-CTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGA-TGGTCTCTTTCTT 137683 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 | ||||||| | | |||| | || ||| ||||||||||||| ||| Sbjct 137682 TGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACATCTCCGAATGAATATTCTCAA 137623 Query 75064 TGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA-- 75120 | ||| | | | | |||||||| |||||||| | | ||| ||||| || | Sbjct 137622 TCG-CGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATACCTGAACATCG---GACATG 137567 Query 75121 AATTCATGT-CGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 ||| | | | | |||||||| ||||||||| || ||||||||||| || || | || Sbjct 137566 AATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGAAGAAGGCTAAGACA 137507 Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC-CTTCAGGTCCCCCGC 75238 ||||| ||||| || || |||| | | || |||||||| | || |||| | Sbjct 137506 TGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATCGCGTC-CGTCCTGTGA 137448 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATC-GCCTTTTTGTACA 75288 | ||| | |||||| | ||||| |||| | || ||||| ||||||| Sbjct 137447 TAGATCGACTTCCTCGGCAGTCCA-AAACGACGCCTCGGCCTTCTTGTACA 137398 >seq16938 Length=276168 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 127529 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 127588 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 127589 TGAGCTACGAGAGC 127602 >seq12268 Length=446330 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 201866 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 201925 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 201926 TGAGCTATGAAAGCAA 201941 >seq16000 Length=993530 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 376097 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 376156 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 376157 TGAGCTACGAGAGC 376170 >seq14883 Length=54083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 25418 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25477 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 25478 TGAGCTATGAAAGC 25491 >seq14079 Length=689811 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 570115 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 570056 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 570055 TGAGCTATGAAAGC 570042 >seq13031 Length=399939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 119975 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 119916 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 119915 TGAGCTACGAGAGC 119902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547090742257600