Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16577 140 3e-28 seq14499 136 3e-27 seq12257 122 8e-23 seq14413 113 4e-20 seq16023 104 2e-17 >seq16577 Length=433012 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || ||||||||||| ||| | || Sbjct 33853 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCATCA 33794 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| || |||||||| || ||||| ||||| Sbjct 33793 GATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGATCAG 33734 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||| | |||||| || || || ||||||||||| Sbjct 33733 CAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTACAAC 33674 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| ||||| | ||| | ||| | ||| | || ||||| Sbjct 33673 ATCCAGAAGGAATCGACGCTTCATCTCGTTCTTCGTCTACGTGGTGG 33627 >seq14499 Length=662897 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || |||||| | |||||||| || ||||| ||| Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || |||||||| ||||| || || || || || Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||||||| | ||||| | ||| | |||||||||| Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | ||| | ||| | | ||| ||||||| || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGGTAT 224162 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| |||||||| | || || || ||||| || || Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || ||||| | || ||| || ||| || | || |||||| Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | ||||| || | ||||| | ||||| || Sbjct 223755 ATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGTAT 223706 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| || || ||||| | || ||||| || || || || Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||| || |||||||| ||||| || || || ||||| Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||||||| | ||||| | ||| | |||||||||| Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| || |||| |||||| Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTT 223954 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || ||||| | || ||| | ||||| ||| || Sbjct 223707 ATGCAGATTTTCGTCAAAACCCTTACTGGCAAAACCATAACTTTGGAAGTTGAAAGCTCA 223648 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||||||||| || ||||| || || Sbjct 223647 GACACCATCGATAATGTAAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAG 223588 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| ||||| | ||||| | ||| || | |||||||| Sbjct 223587 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTACAAT 223528 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || |||| ||||| | || ||||| || Sbjct 223527 ATTCAGAAGGAGTCAACACTTCACCTGGTCCTGCGTCTTCGTGGTGGTAT 223478 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| || | || || | ||||| ||| ||| Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || |||||||||||||| || ||||| || || Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| ||||| | ||||| | ||| | | || ||||| Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAAT 223300 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || |||| ||||| | || ||||| || Sbjct 223299 ATACAAAAGGAGTCAACTCTTCACCTGGTCCTGCGTCTCCGTGGTGGTAT 223250 >seq12257 Length=1143886 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||| | || Sbjct 1016419 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTAGAGGTTGAATCCTCT 1016360 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || ||| || || || ||||| |||||||| ||||| ||||| Sbjct 1016359 GATACGATCGATAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCAG 1016300 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || |||||||| ||| || || | | ||||||||| Sbjct 1016299 CAACGGTTGATCTTCGCCGGAAAGCAATTGGAGGACGGTAGAACTCTCGCGGATTACAAC 1016240 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || |||||| | |||||| | || || Sbjct 1016239 ATCCAGAAGGAATCAACGCTTCACTTGGTTCTCCGTTTGAGAGGAGG 1016193 >seq14413 Length=739167 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || |||||||| | || ||||| ||||| || || Sbjct 402624 ATGCAGATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTCTAGAAGTTGAGAGCTCA 402565 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||||||||| || || || || || || || Sbjct 402564 GACACCATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 402505 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || ||||| | ||||| | ||| || | ||||||||| Sbjct 402504 CAACGTTTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTGCAGATTACAAC 402445 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || |||| | ||| | || ||||| || Sbjct 402444 ATTCAGAAGGAATCAACTCTTCACCTGGTGCTACGTCTCCGTGGTGGTAT 402395 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| || || |||||||| | || ||| | || || || ||| Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || |||||||||||||| || || || || || Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| | ||||| | ||| || | || |||||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | || | ||| | || ||||| || Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTGCTTCGTCTCCGTGGTGGTAT 402623 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || |||||| | || ||||| || || || || Sbjct 404353 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTAGAGAGCTCA 404294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || || || || Sbjct 404293 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCAG 404234 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||| | ||||| ||||| | || || | || || | || |||||| Sbjct 404233 CAGAGACTAATCTTTGCCGGTAAACAGCTCGAGGATGGACGTACTCTTGCAGACTACAAC 404174 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||| | || | ||| | || ||||| || Sbjct 404173 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCTACGTCTTCGCGGTGGTAT 404124 >seq16023 Length=121467 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | ||||| || |||||||| || Sbjct 24613 ATGCAGATTTTTGTTAAGACCTTGACCGGTAAGACCATTACCCTCGAAGTGGAGAGCTCT 24554 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| ||||| || || || || || Sbjct 24553 GACACCATAGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 24494 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || || || ||| | | || |||||| Sbjct 24493 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCCTCGCTGACTACAAC 24434 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | || ||||| | ||| | || ||||| Sbjct 24433 ATTCAAAAGGAGTCCACACTCCACTTGGTCCTCCGTCTCCGTGGTGG 24387 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| |||| |||||| | || || | || |||||| || Sbjct 25298 CATGCAAATCTTCGTTAAAACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAAAGCTC 25239 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| ||| || |||||||| || || || || || || || Sbjct 25238 CGATACCATCGACAACGTTAAAGCAAAGATCCAAGACAAGGAGGGAATCCCCCCGGACCA 25179 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||| || || | || || || || | | |||||||| Sbjct 25178 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTCTAGCTGATTACAA 25119 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || ||||| |||||| | || ||||| || Sbjct 25118 CATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTACGTGGTGGTAT 25068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434818847178240