Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq17130 100 2e-16
seq16577 93.3 3e-14
>seq17130
Length=165301
Score = 100 bits (110), Expect = 2e-16
Identities = 157/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || ||||||||||| || |||||| || || |||| || |||
Sbjct 19896 AAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCA 19837
Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| || | || ||||| |||||| || || ||||| |||||| | || ||
Sbjct 19836 TCTGATACAATCGACAAT--GTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGG 19779
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||||||||||||||| |||||||||||| | || |||| | | || | ||||
Sbjct 19778 ACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATT 19719
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
|||| ||||| || || ||| | ||||| ||| | |||||
Sbjct 19718 ACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTT 19676
>seq16577
Length=433012
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844
|| ||||| || || |||||||| || || || ||| || || |||| |||||| |
Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797
Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| || || ||||| |||||| || || || |||||||| |||| ||
Sbjct 33796 TCAGATACAATCGACAAT--GTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGG 33739
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963
| |||||||| || ||||| || ||||||||| | || |||| || | |||| |||||
Sbjct 33738 ATCAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTG-CCGAT 33680
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || || || | ||| | ||| | ||| | ||||| ||
Sbjct 33679 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTTCTTCGTCTACGTGGTGG 33627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355782979519224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |