Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17130 100 2e-16 seq16577 93.3 3e-14 >seq17130 Length=165301 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || ||||||||||| || |||||| || || |||| || ||| Sbjct 19896 AAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCA 19837 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || ||||| |||||| || || ||||| |||||| | || || Sbjct 19836 TCTGATACAATCGACAAT--GTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGG 19779 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||||||||||||||| |||||||||||| | || |||| | | || | |||| Sbjct 19778 ACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATT 19719 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| ||||| || || ||| | ||||| ||| | ||||| Sbjct 19718 ACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTT 19676 >seq16577 Length=433012 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 || ||||| || || |||||||| || || || ||| || || |||| |||||| | Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || ||||| |||||| || || || |||||||| |||| || Sbjct 33796 TCAGATACAATCGACAAT--GTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGG 33739 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | |||||||| || ||||| || ||||||||| | || |||| || | |||| ||||| Sbjct 33738 ATCAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTG-CCGAT 33680 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || || | ||| | ||| | ||| | ||||| || Sbjct 33679 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTTCTTCGTCTACGTGGTGG 33627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355782979519224