Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17130 86.0 5e-12 seq16023 86.0 5e-12 >seq17130 Length=165301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | || ||||| || || || || || ||||| ||||| || Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 | ||| | |||| || || ||||| || || || || | || ||||||| ||||||| Sbjct 19727 AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGG 19786 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | || ||||| ||| ||| ||||| | | | ||||| || || || Sbjct 19787 -ATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | ||||| |||| ||||| || ||||| || ||||| |||||||| Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896 >seq16023 Length=121467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| ||| || || || || || ||||| || || || || Sbjct 24855 CGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGACCG 24914 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || ||||||||||| || || || | | |||||||| ||||||| | | || || Sbjct 24915 TCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGG-ATACCTTCCTT 24973 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCG 39244 |||| |||||| |||| ||| | | | || || ||| |||||| |||| | Sbjct 24974 GTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAAG 25029 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | |||||||| | || || |||||||| ||||| Sbjct 25030 TGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCAT 25069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || || || ||||| || || || || | Sbjct 25083 CGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCA 25142 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| || | | ||||||||| | ||| | | ||| ||| Sbjct 25143 TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTG 25202 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| || || || | ||| | | | |||||| ||||| |||| ||||| Sbjct 25203 TCTTGGATCTT-TGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGAT 25261 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||||| |||||||| ||||||||||| Sbjct 25262 GGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429449735086856