Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq14462 183 4e-41 seq14680 125 1e-23 seq16652 96.9 5e-15 >seq14462 Length=746139 Score = 183 bits (202), Expect = 4e-41 Identities = 402/595 (68%), Gaps = 8/595 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| ||||| || ||||| |||| ||||| ||||| || || ||||| Sbjct 137939 ACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAG 137880 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || |||||||| ||||| || || | |||| || || ||||| Sbjct 137879 TCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAA 137820 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| ||| || || || || | | ||||| || | | | | || Sbjct 137819 GATACCTTCAACGCAGGCGAAGGC--TACGATACGCTCCGCAAAGGTTTGAGATCCGTCG 137762 Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | || ||||| ||||| || |||||||| || || Sbjct 137761 ATCCAA-GTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCG 137703 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||||| || | |||| ||| | || || | ||| ||||| | | ||||||||||| Sbjct 137702 AAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACAT 137643 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || |||||||| ||||| || || ||||||||||| ||| | ||| || | | Sbjct 137642 CTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATAC 137583 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| || | || ||| ||||| || | |||||| || || |||||| || | Sbjct 137582 CTGAACAT-CGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGG 137524 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || ||||| ||||| || || || | | |||| | | | || | ||| | Sbjct 137523 CGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAAT 137464 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | || | ||||| ||| ||||| || || |||||||| || ||||| || || | Sbjct 137463 CGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCT 137404 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 | ||||| | ||| || | |||||| || ||||| ||| |||||| | ||| Sbjct 137403 TGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGG 137349 >seq14680 Length=376954 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | |||| | || |||| |||||||| |||||| Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| || |||||| || || Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | |||||| || ||| Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || |||||| |||| | |||||||||||| Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | || ||||||||||| || |||||| ||| ||| | | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||| || | || || || || | |||||||| || || || | |||||| Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| ||||||||||| | | ||| | || | ||||| | ||| ||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGA-CAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735 Query 78577 AAGTTTTAAAACCAAAATAGT 78597 ||||||| || || || |||| Sbjct 229736 AAGTTTTGAATCCGAAGTAGT 229756 >seq16652 Length=266037 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || || || | ||| | || || | ||| | |||| || ||| || | ||| || Sbjct 240192 CCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCA 240133 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||||||||| || ||| ||||||||||||| |||| ||||| ||| || || Sbjct 240132 TTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAA 240073 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||||||||| || || || Sbjct 240072 ACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATATC 240013 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||| ||||| ||||| |||| Sbjct 240012 CCCTCGATACTATCATCTTTCAT 239990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694509790311680