Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14680 134 2e-26 seq16652 114 2e-20 >seq14680 Length=376954 Score = 134 bits (148), Expect = 2e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | |||||||||||||||||||||||| ||| ||| | | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| || || | || ||||| | |||||||| ||||| || | |||||| Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| ||||||| ||| ||| ||| | || | ||||| | ||| ||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGACA-ACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735 Query 77172 AAGTTTTAAAACCAAAATAGT 77192 ||||||| || || || |||| Sbjct 229736 AAGTTTTGAATCCGAAGTAGT 229756 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | |||| | || |||| |||||||| ||| || Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| |||||| |||||| || || Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| || Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || ||||||||| |||| | |||||||||||| Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 >seq16652 Length=266037 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || || || | ||| | ||||| | ||| | |||| || ||| || | |||||| Sbjct 240192 CCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCA 240133 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||| || ||| ||||||||||||| ||||||||| ||| || || Sbjct 240132 TTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAA 240073 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||||||||| ||||| || Sbjct 240072 ACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATATC 240013 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| ||||||||||| |||| Sbjct 240012 CCCTCGATACTATCATCTTTCAT 239990 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||||| ||| || | ||||| ||||||||||| |||||| ||| ||| | || || Sbjct 239871 AGTTCCTGAATTGAAGAGAGTAGGTGATGCATGAGTAAACCATCTTTGAGACATTAAATG 239812 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || ||||| || |||||| || |||| || | ||||| Sbjct 239811 ATAAGTTTGGATTGCAGAATCAATATCTTCTTTATGAATCCCAACAGAAACCCTCATCAG 239752 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| ||| | || | ||| || | |||||| |||| | Sbjct 239751 CATGTGTTGAGGCCTTTCAACA-ACTTTTCCTTGGACTTTTAAGAGATATGATCTTTCAA 239693 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| || | ||| ||| |||| || || || || Sbjct 239692 GCGTTTTAAATCCAAAGTAATCATATTCAAAATCTCGATCATAGATGAT 239644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712771209315840