Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq14680 134 2e-26
seq16652 114 2e-20
>seq14680
Length=376954
Score = 134 bits (148), Expect = 2e-26
Identities = 152/201 (76%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| |||||||| | |||||||||||||||||||||||| ||| ||| | | ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|||||||| || || | || ||||| | |||||||| ||||| || | ||||||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171
|||||| ||||||| ||| ||| ||| | || | ||||| | ||| ||| |||| |
Sbjct 229677 CATATGTTGAGGTCTTTCGACA-ACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735
Query 77172 AAGTTTTAAAACCAAAATAGT 77192
||||||| || || || ||||
Sbjct 229736 AAGTTTTGAATCCGAAGTAGT 229756
Score = 125 bits (138), Expect = 1e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| || || | ||| | ||||| | |||| | || |||| |||||||| ||| ||
Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|||||||| |||||||| ||| ||| ||||||||| |||||| |||||| || ||
Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || || || || ||| || | |||||| ||| | ||| ||||| ||
Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
||||| || ||||||||| |||| | ||||||||||||
Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
>seq16652
Length=266037
Score = 114 bits (126), Expect = 2e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || || || | ||| | ||||| | ||| | |||| || ||| || | ||||||
Sbjct 240192 CCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCA 240133
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|||||||| ||||| || ||| ||||||||||||| ||||||||| ||| || ||
Sbjct 240132 TTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAA 240073
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || || || || ||| || | |||||| ||||||||| ||||| ||
Sbjct 240072 ACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATATC 240013
Query 76934 CCCTCTATACTATCATCCATCAT 76956
||||| ||||||||||| ||||
Sbjct 240012 CCCTCGATACTATCATCTTTCAT 239990
Score = 100 bits (110), Expect = 4e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||||| ||| || | ||||| ||||||||||| |||||| ||| ||| | || ||
Sbjct 239871 AGTTCCTGAATTGAAGAGAGTAGGTGATGCATGAGTAAACCATCTTTGAGACATTAAATG 239812
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| |||| || | | || ||||| || |||||| || |||| || | |||||
Sbjct 239811 ATAAGTTTGGATTGCAGAATCAATATCTTCTTTATGAATCCCAACAGAAACCCTCATCAG 239752
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171
||| || ||||| | ||| ||| ||| | || | ||| || | |||||| |||| |
Sbjct 239751 CATGTGTTGAGGCCTTTCAACA-ACTTTTCCTTGGACTTTTAAGAGATATGATCTTTCAA 239693
Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|||||||| ||||| || | ||| ||| |||| || || || ||
Sbjct 239692 GCGTTTTAAATCCAAAGTAATCATATTCAAAATCTCGATCATAGATGAT 239644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712771209315840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |