Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 682 0.0
seq17927 497 1e-135
seq12403 131 2e-25
seq14836 116 5e-21
seq17628 95.1 2e-14
seq15851 87.8 2e-12
>seq11797
Length=28381
Score = 682 bits (756), Expect = 0.0
Identities = 750/995 (75%), Gaps = 2/995 (0%)
Strand=Plus/Minus
Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254
|||||| | ||||| ||||||||| | ||||| || || | || |||||||| |
Sbjct 1401 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1342
Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314
|||||| || || | ||| | ||||| | || || | || || | ||||||||
Sbjct 1341 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282
Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374
||| || || || || || || || ||||| ||| |||| || || | || ||||||||
Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222
Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434
|| || || |||||| || ||||| |||| || || || | || || || || ||
Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162
Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494
|||||||| ||||| | ||||| ||||| || |||||||||||||| |||| | ||
Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102
Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554
| ||||| | |||| || || || |||||||||||||||||| | || |||
Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042
Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614
| | ||||||||||||||||| |||||| ||| || |||||||| ||||| || ||
Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982
Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674
|| ||| || |||||||| | |||||||| ||| |||||||||||| || || ||
Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922
Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734
| ||| || || |||| ||| |||| ||||| || ||||| ||||| || ||||||||
Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862
Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794
|| |||||| | ||||| |||||||| ||||| || || || || ||||| ||||| ||
Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802
Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853
|||| |||| ||||| | | | | || | |||||||| || ||| || || | |
Sbjct 801 TTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 743
Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913
|||||| ||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct 742 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 683
Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973
| || |||||||||| |||||| || ||||||||||||||| | || |||||| | |
Sbjct 682 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 623
Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033
| |||||||| || || || || |||||||||||| | ||| |||| |||||||||||||
Sbjct 622 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTA 563
Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093
|| | ||||| || || |||||||| || | ||||| ||||||| ||||| | || |
Sbjct 562 ACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATA 503
Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153
| ||||| || || | ||||||||| ||||| |||||||| ||||| || |||||||
Sbjct 502 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 443
Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 184188
|||||||||||||||| ||||| |||| || ||||
Sbjct 442 CTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408
>seq17927
Length=56337
Score = 497 bits (550), Expect = 1e-135
Identities = 714/1004 (71%), Gaps = 2/1004 (0%)
Strand=Plus/Plus
Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030
||||||||||| | | |||||||| || ||||| || |||||||| || | || |
Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073
Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090
|||| ||| ||| | || | || || ||| | || || ||||| ||||| || |
Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133
Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150
||||||| || || ||||| ||| || | || ||| |||||| | || || || |
Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193
Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210
| || ||||||||| | | | | ||||| | | |||| ||||||||||| | |
Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253
Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270
|||||||| | | || |||| ||| | || || || |||| |||||| || |||||||
Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313
Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329
| || || || | |||||||| ||| | || || |||||| | ||| ||| | |
Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 4373
Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389
| || || || ||||| || || || |||||||| || ||||| |||||| ||| |||
Sbjct 4374 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432
Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449
|| || || || || || || || |||||||| || || ||||| || || ||
Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492
Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509
|| ||| |||| | | || ||||||| || || || ||||| ||||| ||||| ||
Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 4552
Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569
|||||||| || || ||| | || || | |||||||| | || || ||||||| ||||
Sbjct 4553 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 4612
Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629
|||||||||||| | | ||||||||| || ||||| |||||| || || | |
Sbjct 4613 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 4672
Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689
|| |||| |||||||| ||||| |||||||| || ||| | || |||||||| |||||
Sbjct 4673 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 4732
Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749
|| |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || |
Sbjct 4733 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 4792
Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809
||| | |||| | | |||| | | ||||| ||| | ||||| || || ||||||
Sbjct 4793 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGAC 4852
Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869
||||| ||||| | | ||||| || ||||| || || ||||| ||||| || ||
Sbjct 4853 TTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAA 4912
Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929
||||| || || || |||||| | ||||| |||||||| | ||||| || ||||||
Sbjct 4913 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 4972
Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973
||| || |||| ||||| || || | ||| | || ||||||||
Sbjct 4973 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
>seq12403
Length=479826
Score = 131 bits (144), Expect = 2e-25
Identities = 125/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039
||||||||| ||| ||| ||| |||||||||| ||||||||||| || ||||||||
Sbjct 152751 TTGAATGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGC 152692
Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099
|| ||||| ||||||||| ||||||| | ||||| |||||| | | | ||| ||||
Sbjct 152691 CTTACTCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTG 152632
Query 171100 TTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGAT 171139
|||||||||| ||||| ||| | || ||||| |||||
Sbjct 152631 TTGATCAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT 152592
>seq14836
Length=433140
Score = 116 bits (128), Expect = 5e-21
Identities = 124/161 (77%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039
||||||||| ||| ||| || ||||||| |||||||||||||| ||| |||| |||
Sbjct 174398 TTGAATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGC 174457
Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099
| || || ||| ||||| ||||||| | ||||||||| ||| ||| | |||| |
Sbjct 174458 CTTTCTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATA 174517
Query 171100 TTGATCAATCCGATCAATC-TTTCCTTGATGATGATCAGAT 171139
|||| || | ||| |||| ||||||||||||||||||||
Sbjct 174518 TTGACCAGACAGAT-AATCAGTTCCTTGATGATGATCAGAT 174557
>seq17628
Length=99897
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050
|| || ||||| ||||| || || ||||||||||||||| |||| || || |||||
Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477
Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110
| ||||| || |||| || ||||| ||||| || || | || ||||||||| ||
Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417
Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGA 171142
||| || |||||||||||| || ||| ||
Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCGA 84385
>seq15851
Length=433742
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048
|||| || ||||| || ||||| || ||||||||||||||| |||| || | || |
Sbjct 393558 CTGACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCAT 393617
Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108
| |||||||| ||||| || || ||||| | |||| || ||| ||||||| || |
Sbjct 393618 GCAAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGT 393677
Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGT 171166
| || || | ||||| || || ||||| || ||||| | | ||||| || ||
Sbjct 393678 CTGAGGGTTCGTATCTTGAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGT 393735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621928008085440
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