Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq11797 682 0.0 seq17927 497 1e-135 seq12403 131 2e-25 seq14836 116 5e-21 seq17628 95.1 2e-14 seq15851 87.8 2e-12 >seq11797 Length=28381 Score = 682 bits (756), Expect = 0.0 Identities = 750/995 (75%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| ||||||||| | ||||| || || | || |||||||| | Sbjct 1401 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1342 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||| || || | ||| | ||||| | || || | || || | |||||||| Sbjct 1341 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || || |||||| || ||||| |||| || || || | || || || || || Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| ||||| | ||||| ||||| || |||||||||||||| |||| | || Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||| | |||| || || || |||||||||||||||||| | || ||| Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 | | ||||||||||||||||| |||||| ||| || |||||||| ||||| || || Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 || ||| || |||||||| | |||||||| ||| |||||||||||| || || || Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| ||| |||| ||||| || ||||| ||||| || |||||||| Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | ||||| |||||||| ||||| || || || || ||||| ||||| || Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 |||| |||| ||||| | | | | || | |||||||| || ||| || || | | Sbjct 801 TTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 743 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| ||||||||||||||||| || ||||||||||| ||||||||||| || |||| Sbjct 742 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 683 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || |||||||||| |||||| || ||||||||||||||| | || |||||| | | Sbjct 682 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 623 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 | |||||||| || || || || |||||||||||| | ||| |||| ||||||||||||| Sbjct 622 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTA 563 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 || | ||||| || || |||||||| || | ||||| ||||||| ||||| | || | Sbjct 562 ACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATA 503 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 502 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 443 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 184188 |||||||||||||||| ||||| |||| || |||| Sbjct 442 CTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408 >seq17927 Length=56337 Score = 497 bits (550), Expect = 1e-135 Identities = 714/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || || | Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | ||||| | | |||| ||||||||||| | | Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || |||| |||||| || ||||||| Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 4373 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| ||| Sbjct 4374 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| |||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 4552 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||||| | || || ||||||| |||| Sbjct 4553 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 4612 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 4613 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 4672 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 4673 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 4732 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 4733 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 4792 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||| | ||||| || || |||||| Sbjct 4793 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGAC 4852 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 ||||| ||||| | | ||||| || ||||| || || ||||| ||||| || || Sbjct 4853 TTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAA 4912 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | ||||| |||||||| | ||||| || |||||| Sbjct 4913 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 4972 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 4973 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 >seq12403 Length=479826 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 ||||||||| ||| ||| ||| |||||||||| ||||||||||| || |||||||| Sbjct 152751 TTGAATGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGC 152692 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 || ||||| ||||||||| ||||||| | ||||| |||||| | | | ||| |||| Sbjct 152691 CTTACTCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTG 152632 Query 171100 TTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGAT 171139 |||||||||| ||||| ||| | || ||||| ||||| Sbjct 152631 TTGATCAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT 152592 >seq14836 Length=433140 Score = 116 bits (128), Expect = 5e-21 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 ||||||||| ||| ||| || ||||||| |||||||||||||| ||| |||| ||| Sbjct 174398 TTGAATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGC 174457 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 | || || ||| ||||| ||||||| | ||||||||| ||| ||| | |||| | Sbjct 174458 CTTTCTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATA 174517 Query 171100 TTGATCAATCCGATCAATC-TTTCCTTGATGATGATCAGAT 171139 |||| || | ||| |||| |||||||||||||||||||| Sbjct 174518 TTGACCAGACAGAT-AATCAGTTCCTTGATGATGATCAGAT 174557 >seq17628 Length=99897 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || || ||||| ||||| || || ||||||||||||||| |||| || || ||||| Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | ||||| || |||| || ||||| ||||| || || | || ||||||||| || Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGA 171142 ||| || |||||||||||| || ||| || Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCGA 84385 >seq15851 Length=433742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| || ||||| || ||||| || ||||||||||||||| |||| || | || | Sbjct 393558 CTGACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCAT 393617 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | |||||||| ||||| || || ||||| | |||| || ||| ||||||| || | Sbjct 393618 GCAAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGT 393677 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGT 171166 | || || | ||||| || || ||||| || ||||| | | ||||| || || Sbjct 393678 CTGAGGGTTCGTATCTTGAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGT 393735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621928008085440