Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq11797 677 0.0 seq17927 558 4e-154 >seq11797 Length=28381 Score = 677 bits (750), Expect = 0.0 Identities = 748/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | ||| || ||||| || || | |||||| Sbjct 1340 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || ||||| || |||| || || | || |||||||| Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 || || || ||||| |||| ||| ||||| ||||||||| |||| || ||||| || Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| ||| | || |||||||| |||||||||||||||| |||| |||| Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | |||||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 ||| ||| || |||||||| | |||||||| || ||||||| |||||||| || || Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| |||| | || |||||||||||||| ||||| || |||||||| Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| |||||| || | | || ||||| |||||||| || || | || Sbjct 801 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 ||||| || ||||| ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || |||| |||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| |||||||||||| | || |||| || |||||||| || Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | || || ||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920 ||||||||||||||| ||||| |||| || |||| Sbjct 441 TCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408 >seq17927 Length=56337 Score = 558 bits (618), Expect = 4e-154 Identities = 720/991 (73%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| || Sbjct 4031 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTT 4090 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 4091 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 4150 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || || ||||||||||| || | Sbjct 4151 GCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAAT 4210 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | ||||| | || | || ||||||||||| | ||||| || || | || Sbjct 4211 AGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 4270 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||||||||||| || |||||||| || || ||| | ||| Sbjct 4271 TGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 4330 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGC 165538 ||||| ||| | || || |||||||| || ||| || || | | || ||||| ||||| Sbjct 4331 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGC 4389 Query 165539 TATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGG 165598 || || ||||||||||| |||||||| || ||| ||| || || || ||||| || || Sbjct 4390 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGG 4449 Query 165599 ACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCT 165658 ||||| |||||||| || || || || || || || || || ||||| | || Sbjct 4450 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCT 4509 Query 165659 CTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGG 165718 ||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || || Sbjct 4510 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGG 4569 Query 165719 TATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTA 165778 | | | |||| || |||| | || |||||||||| ||| ||||| |||||||| | Sbjct 4570 TGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 4629 Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || ||| || ||| | ||||| | || ||||| Sbjct 4630 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 4689 Query 165839 TTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 165898 |||||| |||||||| |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 4690 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 4749 Query 165899 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 165958 ||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 4750 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGC 4809 Query 165959 TATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| | | ||||| || | || || || || ||||| ||||| || ||||| || Sbjct 4810 TCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAAT 4869 Query 166019 TAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGA 166078 | || || || ||||| || ||||| || ||||| || ||||| || || | || || Sbjct 4870 CCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGA 4929 Query 166079 AGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGA 166138 ||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||||||| Sbjct 4930 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 4989 Query 166139 AGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | ||| | || ||||| |||||| Sbjct 4990 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 5020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557526752907840