Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 118 1e-21
seq17369 91.5 2e-13
>seq14462
Length=746139
Score = 118 bits (130), Expect = 1e-21
Identities = 344/524 (66%), Gaps = 7/524 (1%)
Strand=Plus/Minus
Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567
||| || ||||| ||||| |||||||| || | || || || || || || || |
Sbjct 137939 ACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAG 137880
Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGA 23626
||| ||||| | ||||||||||||| ||| || || | |||| | | ||||| ||||
Sbjct 137879 TCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGG-AGCAGAAACTACCGGAGAAGA 137821
Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686
| ||||| ||||| || ||||| || | ||| |||| ||| | | | |
Sbjct 137820 AGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTT---TGAGATCCGT 137764
Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746
||||| | | | ||| | || ||| |||||| |||||||| |||||
Sbjct 137763 CGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGC 137704
Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806
|||||| | |||||| || || | || || ||||||| |||| ||||||||
Sbjct 137703 GAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACA 137644
Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866
| || ||||||||||| ||||| || || ||||| || || ||| | || || || |
Sbjct 137643 TCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATA 137584
Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926
|||||||| | |||| || | ||| || || || |||||| || |
Sbjct 137583 CCTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGG 137524
Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG-ATAATTTTTTCCAA 23985
| ||||| || | |||| || || || |||| ||| | || | ||| || | ||||
Sbjct 137523 CGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTC-GCCGTCGTTTAAATTCTCCCAA 137465
Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029
|| || | ||||| ||| ||||| || | ||||||||
Sbjct 137464 TCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAA 137421
>seq17369
Length=42627
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927
||| | |||||| || ||||| ||| ||||| || |||||| ||||| |||||
Sbjct 24358 TTGGATATCATTCAAGAATCTAGCAGCCAAATTCTCCAAAACAATTCCATCTGATGCAGC 24299
Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATC 23987
||| ||||| ||||||| ||||||||||||| || | |||||| ||| |||||
Sbjct 24298 AAAAAAAGCTAGAACATGAGTTATAAAATGTCTCTCTGAATCTGATAAAGTTTCCCAATG 24239
Query 23988 ATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029
| | ||| |||||| |||||| || ||| ||| |||||
Sbjct 24238 TTGCACATCCGTTGATAGATCAACCTCTTCAGCTG--CAAAA 24199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521368631396800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |