Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq16023 118 1e-21
seq14413 109 5e-19
seq16726 102 8e-17
seq16577 98.7 9e-16
>seq16023
Length=121467
Score = 118 bits (130), Expect = 1e-21
Identities = 167/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || |||| || || ||| ||||||||| ||||| |||||||
Sbjct 24843 CCACCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 24902
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| |||||||| ||||| ||||| |||| | ||| ||||||| ||
Sbjct 24903 AGGGTACGACCGTCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGG 24962
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| |||||| ||| | || | | | ||||| |||| ||
Sbjct 24963 ATACCTTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TC 25018
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || || || ||||| | ||||| || || ||||||||
Sbjct 25019 CACCTCCAAAGTGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCAT 25069
Score = 113 bits (124), Expect = 4e-20
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || ||| |||||| |||||||| ||||| | |
Sbjct 24387 CCACCACGGAGACGGAGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCG 24446
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| || ||||| || || ||||| ||||||| ||
Sbjct 24447 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 24506
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| ||| || ||||| || | | | ||||| |||| ||
Sbjct 24507 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCTATGGTGTCAGAGCTC---TC 24562
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || | || || || ||||| |||| ||||| || |||||||||||
Sbjct 24563 CACTTCGAGGGTAATGGTCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| || |||| || || || ||||||||| ||||| || || |
Sbjct 25071 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT 25130
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| ||||| || |||| | ||| ||||||| |||
Sbjct 25131 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 25190
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| | || | ||||||| |||| | | | || ||| |||||
Sbjct 25191 ATTCCCTCCTTGT-CTTGGATCTTTGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCAC 25249
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || || || ||||||| || || ||||| || ||||||
Sbjct 25250 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCATG 25298
>seq14413
Length=739167
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| |||||| || || || |||||||||||||| || || |
Sbjct 402398 CCACCACGGAGACGTAGCACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCA 402457
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||| || || || || |||| || || ||||||| |||
Sbjct 402458 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGA 402517
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | |||||||| | ||| | || |||| || | | | ||||| ||| |||
Sbjct 402518 ATACCCTCCTTGT-CTTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCT---CTC 402573
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || ||||| || || || |||||||| |||||||||||
Sbjct 402574 AACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCAT 402624
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||| || || || || |
Sbjct 402170 CCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCA 402229
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || || || || ||||| || || || | ||| ||||| | ||||
Sbjct 402230 AGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGA 402289
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811
| || ||||||||| ||| | || || | |||| | || | |||| ||| ||
Sbjct 402290 ATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTT---TC 402345
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| || || || || || |||| ||||||||||| ||||||||
Sbjct 402346 AACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396
>seq16726
Length=336357
Score = 102 bits (112), Expect = 8e-17
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || ||||| ||||||||| || || ||||| |
Sbjct 61341 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGACTCCTTCTGGATATTGTAGTCAGCT 61282
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || ||||||||||| |||||||| |||| ||||| ||||||| |||
Sbjct 61281 AAAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGA 61222
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | ||||||||| ||| || ||| || | || | ||||| || || |
Sbjct 61221 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCAGAGGATTCGA 61164
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || || || || ||||| || || || ||||| |||||||| ||
Sbjct 61163 CCTCGAGAGTGATAGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 61112
>seq16577
Length=433012
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | || ||||| ||||| |||||||| ||||| || ||||
Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||| || || || ||||| |||| || || || |||| |||
Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || || ||| ||| | || |||| || | | | || || || || ||
Sbjct 33747 ATTCCTTCTTTATCC-TGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGAC 33805
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | ||||||||||||||||| || || || ||||| |||||||| ||
Sbjct 33806 TTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462198178614400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |