Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq16023 118 1e-21 seq14413 109 5e-19 seq16726 102 8e-17 seq16577 98.7 9e-16 >seq16023 Length=121467 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || ||| ||||||||| ||||| ||||||| Sbjct 24843 CCACCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 24902 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||| ||||| ||||| |||| | ||| ||||||| || Sbjct 24903 AGGGTACGACCGTCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGG 24962 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| |||||| ||| | || | | | ||||| |||| || Sbjct 24963 ATACCTTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TC 25018 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || ||||| | ||||| || || |||||||| Sbjct 25019 CACCTCCAAAGTGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCAT 25069 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| |||||||| ||||| | | Sbjct 24387 CCACCACGGAGACGGAGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCG 24446 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| || || ||||| ||||||| || Sbjct 24447 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 24506 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| ||| || ||||| || | | | ||||| |||| || Sbjct 24507 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCTATGGTGTCAGAGCTC---TC 24562 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || | || || || ||||| |||| ||||| || ||||||||||| Sbjct 24563 CACTTCGAGGGTAATGGTCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||||||||| ||||| || || | Sbjct 25071 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT 25130 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| ||||| || |||| | ||| ||||||| ||| Sbjct 25131 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 25190 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | ||||||| |||| | | | || ||| ||||| Sbjct 25191 ATTCCCTCCTTGT-CTTGGATCTTTGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCAC 25249 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || ||||||| || || ||||| || |||||| Sbjct 25250 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCATG 25298 >seq14413 Length=739167 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||||| || || || |||||||||||||| || || | Sbjct 402398 CCACCACGGAGACGTAGCACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCA 402457 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||| || || || || |||| || || ||||||| ||| Sbjct 402458 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGA 402517 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||| | ||| | || |||| || | | | ||||| ||| ||| Sbjct 402518 ATACCCTCCTTGT-CTTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCT---CTC 402573 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || ||||| || || || |||||||| ||||||||||| Sbjct 402574 AACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCAT 402624 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| || || || || | Sbjct 402170 CCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCA 402229 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || || || ||||| || || || | ||| ||||| | |||| Sbjct 402230 AGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGA 402289 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | || ||||||||| ||| | || || | |||| | || | |||| ||| || Sbjct 402290 ATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTT---TC 402345 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || |||| ||||||||||| |||||||| Sbjct 402346 AACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396 >seq16726 Length=336357 Score = 102 bits (112), Expect = 8e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| ||||||||| || || ||||| | Sbjct 61341 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGACTCCTTCTGGATATTGTAGTCAGCT 61282 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| |||||||| |||| ||||| ||||||| ||| Sbjct 61281 AAAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGA 61222 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | ||||||||| ||| || ||| || | || | ||||| || || | Sbjct 61221 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCAGAGGATTCGA 61164 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || ||||| || || || ||||| |||||||| || Sbjct 61163 CCTCGAGAGTGATAGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 61112 >seq16577 Length=433012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || ||||| ||||| |||||||| ||||| || |||| Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| || || || ||||| |||| || || || |||| ||| Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || || ||| ||| | || |||| || | | | || || || || || Sbjct 33747 ATTCCTTCTTTATCC-TGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGAC 33805 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||||||||||||||||| || || || ||||| |||||||| || Sbjct 33806 TTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462198178614400