Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7113 219 5e-52 seq99321 95.1 1e-14 >seq7113 Length=4078 Score = 219 bits (242), Expect = 5e-52 Identities = 604/916 (66%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 |||||| || || || || | || || || ||||| ||||| |||| |||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 23903 TTCCATGA-AATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 |||||| |||| | ||||| | |||| ||| | | | | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 ||||||||| || ||||| || || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 24022 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079 ||||| || || ||||| | ||||| ||| || || || ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAG--ACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 24080 AATAGATCTTACTGTTTCTTCACTCGGTGGA-----TACAATAAATGTTTAAACATCAAA 24134 || | || ||||| || || | | | | | | | | | ||| Sbjct 669 GATCCCT-----TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAA 615 Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||||||||| || || || || |||| ||||||||||| || || || | | Sbjct 614 CAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAAT 555 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||||| || || ||||||||||| || || || ||| || ||| || ||||| Sbjct 554 CCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAA 496 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 ||| ||||| || || || ||||| | ||||| || | |||| | ||| || Sbjct 495 AATCCCTTCAACACAAGCGAAAGCAATTAATCTTT---CANATTCGGCAC---CATCGAT 442 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| || ||||| ||||| ||||| ||||||||||| ||||| || || ||| || Sbjct 441 CCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 24374 GAGATAGt-ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | || || |||||| | | ||||| | || || || | | ||| |||||||| Sbjct 381 TA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | ||||| |||||||||||||| ||||| || ||||| || | || || | | | Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTT 263 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | | ||| | || || | || | ||||||| || || || ||| || |||| Sbjct 262 GAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAA 203 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAAT 24609 | || || | || || | || |||| || ||| || | |||| | | | ||||| Sbjct 202 AGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAAT 143 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 | ||||| || | ||| |||||||| | ||||| || || || || || || | Sbjct 142 GGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCT 83 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 | ||||| | |||||| | | | |||||||| ||||| ||| ||||| | ||| |||| Sbjct 82 TGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTTT 23 Query 24730 TTGCAAGGATTGGTTC 24745 || || | ||| || Sbjct 22 CTGTGAGAAGTGGGTC 7 >seq99321 Length=426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 |||||||||||| ||||| |||| ||||| || || |||||||||||| ||||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 ||| || || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||| |||||||| || || || || ||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592850758843200