Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq16595 98.7 8e-16 >seq16595 Length=7721 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| ||||||||||| |||||||| || |||| ||| | | ||||| ||||| || || Sbjct 1927 AGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGCTTACC 1868 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| |||| | | ||||||||| ||| | || ||||| || ||||| || Sbjct 1867 AGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTTGGTCTT 1808 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | ||||| | |||| |||| |||||||||||| || || || || Sbjct 1807 AACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTCAATGT 1748 Query 21158 TTTGACAAATATTTGCATT 21176 ||||||||||| |||||| Sbjct 1747 CTTGACAAATATCTGCATT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421655335035440