Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5726 113 5e-20 seq5800 102 8e-17 seq14764 84.2 2e-11 >seq5726 Length=29179 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || || || |||||||| ||| | || || ||| || Sbjct 26914 AAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCC 26855 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | ||||| || || || || | ||| Sbjct 26854 TCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGAC 26795 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| ||||| | ||| || ||||| || || || | || || ||| || ||| Sbjct 26794 CAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTAC 26735 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | || || ||| | ||| | || ||||| || || Sbjct 26734 AACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq5800 Length=18681 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || ||||| |||||||| || || |||| ||||| Sbjct 1731 AAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGT 1790 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | || |||| | ||| || || | ||||| || || || ||| | || Sbjct 1791 TCCGATACCATTGACAACG-TTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGA 1849 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || | |||| ||| || |||||||| || || | |||||||| |||||| Sbjct 1850 CCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTA 1909 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| || | || || || || || Sbjct 1910 CAATATCCAGAAAGAATCAACACTCCACCTTGT 1942 >seq14764 Length=84029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || ||||| || || || |||||| | || || || | | Sbjct 1948 ATGCAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCG 1889 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| ||||| | ||||| || || |||||| | ||||| Sbjct 1888 GACACCATTGACAACG-TGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACCA 1830 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || || || |||||||| || | || || | || ||||| Sbjct 1829 GCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAA 1770 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 1769 TATCCAGAAGGAGTCCACCCTTCACCTTGT 1740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514463502238400