Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq14764 102 1e-16 seq5800 86.0 9e-12 >seq14764 Length=84029 Score = 102 bits (112), Expect = 1e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| || || || || ||||| || | ||| |||| || | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| |||| |||||||| || ||||| || || || || || || || |||| Sbjct 2116 -GACACCATTGATAATGTTAAAACA-AAGATTCAGGACAAGGAGGGAATTCCCCCAGATC 2059 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || |||||||||||||| | || ||| | || || | | ||||| | Sbjct 2058 AGCAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACA 1999 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || || || | ||||||||| | || | || |||||||| Sbjct 1998 ACATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGGTAT 1947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| |||||||| || ||||| ||||| ||| | | || || |||||||| Sbjct 2896 AAGATCCAAGACAAAGAAGGAATTCCACCAGATCAGCAACGTTTGATCTTCGCAGGAAAG 2837 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||| ||| | || || | | || || || ||||||||||| |||||| | || Sbjct 2836 CAACTAGAAGATGGCCGTACTCTTGCCGACTACAACATTCAAAAAGAGTCAACTCTCCAC 2777 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 | ||| | |||||| |||||||| Sbjct 2776 CTTGTTCTCCGTTTAAGAGGTGGT 2753 >seq5800 Length=18681 Score = 86.0 bits (94), Expect = 9e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 124534 ATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 ||| ||||||||| || | ||||| || || |||||||| |||||| | ||| | || Sbjct 1729 ATAAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGA 1788 Query 124594 CAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 ||||| ||| || |||| || || || ||||| || ||||| || || || Sbjct 1789 GTTCCGATACCATTGACAACGTTAAGACT-AAGATCCAAGACAAGGAAGGGATTCCCCCA 1847 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || ||||| | | || || || || ||||| |||||||| | || || | | || Sbjct 1848 GACCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGAC 1907 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||| | || | || | ||| | ||||||| || Sbjct 1908 TACAATATCCAGAAAGAATCAACACTCCACCTTGTACTCCGTCTCAGAGGTGGAAT 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754347934912000