Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5800 120 3e-22 seq14764 116 3e-21 seq16595 100 2e-16 seq5726 96.9 3e-15 >seq5800 Length=18681 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| || ||||| || || ||||| ||| | ||||| |||||| ||||| Sbjct 1937 GTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTG 1878 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| |||| | |||||| || || || || || || ||||||||| || || Sbjct 1877 TTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTT 1818 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | || | ||| || | ||||||||||||| || | ||||||||||| Sbjct 1817 AGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGT 1758 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| Sbjct 1757 GAGAGTCTTGACGAAGATTTGCAT 1734 >seq14764 Length=84029 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| ||||| || || ||||||||||| | ||| || ||| || Sbjct 1968 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCA 2027 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| || |||| | | ||||||||| || || || ||||||||||| | Sbjct 2028 AGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 2087 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| |||||| | || | |||||| | ||||| ||||| | ||| | || || Sbjct 2088 ATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTT 2147 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || || ||||| Sbjct 2148 CCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || |||||||||||||||||||| ||| | ||| || ||| || || || Sbjct 2777 GTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTG 2836 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||| | ||| |||||||| || || || || || |||||| || || Sbjct 2837 CTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 2896 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| | |||||||| |||| || | || || ||||| Sbjct 2897 GGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGT 2956 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||| Sbjct 2957 AAGGGTTTTCACGAAGATTTGCAT 2980 >seq16595 Length=7721 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || || |||||||||||| |||| | ||| |||||||| || || || || |||||| Sbjct 607 TCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTG 548 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| || || ||| || | || | |||||| | ||||||||||||| || | Sbjct 547 TCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTAATG 488 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| || || || ||||| Sbjct 487 GTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq5726 Length=29179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 |||| | |||||| || | || || || || || ||||||||||| | ||| || Sbjct 26694 AATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGG 26753 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || || |||||||| ||| | |||||||| || || || || || || || ||| Sbjct 26754 CCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCC 26813 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| || || || || | |||| |||||| | | || ||||| | ||| Sbjct 26814 TTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTT 26873 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || ||||| || || |||||||| Sbjct 26874 ATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 26911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433209987279280