Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5726 95.1 1e-14 seq14764 86.0 7e-12 >seq5726 Length=29179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | ||||||||| | || ||||| || || ||||||||||| Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || || || || ||||| ||||| || || ||||| | || Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACC 26864 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | || |||||||| || ||||| || || || ||||| |||||||| Sbjct 26865 TCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | |||| |||||| || || ||||||||||| ||||| || | || || Sbjct 1968 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCA 2027 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || || || || || | | |||||| || | || | | |||||||||| || Sbjct 2028 AGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCC-TG 2086 Query 43095 ATTTTTTGTTTGAGC-GTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | | ||||||| | | | | | ||||| ||| || || || | || || || Sbjct 2087 AATCTTTGTTTTAACATTATCAATGGTGTCTGAACTC---TCAACCTCCAAGGTAATAGT 2143 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || ||||||||||| Sbjct 2144 CTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||||| ||| || | || || |||||||||||||| || Sbjct 1757 CTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTACCAGCAAA 1816 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | ||||||| | || |||| || | ||| Sbjct 1817 AATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGT-CTTGGATTTTCGTCTTCACGT 1875 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | ||||| || || || || || |||| Sbjct 1876 TGTCAATGGTGTCCGAGCTC---TCAACCTCCAAGGTGATCGTCTTTCCTGTGAGAGTCT 1932 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 1933 TGACGAATATCTGCAT 1948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570978886535200