Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5726 86.0 4e-12 >seq5726 Length=29179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| ||||| |||||||| || | || |||| | || Sbjct 26700 AGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCT 26759 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || || || ||||||||||| || || ||||| || | | |||||||| Sbjct 26760 TCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCT 26819 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | ||||| || || | || |||||| Sbjct 26820 TGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTT 26879 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 26880 TTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 26911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322609980790400