Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7113 194 2e-44 seq12544 114 1e-20 >seq7113 Length=4078 Score = 194 bits (214), Expect = 2e-44 Identities = 589/897 (66%), Gaps = 33/897 (4%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||||||||| || | ||||||||| ||||||||||||||||| ||| Sbjct 921 GACATAACAGAAGCTTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCT 862 Query 15989 TCTAATGAAATATTTTCCAT-AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCA 16047 | ||||||||| |||||| |||||||||||||| || ||| ||| || || Sbjct 861 TGTAATGAAATCAATTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACA 802 Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||| | | | ||| |||||||| || |||||||| || || || ||||||||||||| Sbjct 801 TCCAAGTGCACCCAACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACA 742 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||| |||| ||| || || | ||| || | || | |||| || | ||| Sbjct 741 GTTCATACCTACTAAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAAC 682 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATT---TAACGGAGGGTTTAATAAGTGTTT 16224 || || | | || || | | | || || ||| || | ||| || | Sbjct 681 TGCATCTTTCACGATCCCT-TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGT 623 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 | | || |||||| ||||| ||||| | ||||| || | ||||| |||||||| Sbjct 622 --AGAGTAAACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGA 565 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCC--AAAATATAGCGGCAAATGAA 16342 ||||| | || ||||||| || |||||||||| || ||||| ||| | || | Sbjct 564 GAATGTTAATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACT--T 507 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 || || ||||| || |||||||| || || |||| |||| || | ||| Sbjct 506 CCGGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTTC-----ANATTC-- 454 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 || || |||||| || ||||| | ||||| | || ||||| || | Sbjct 453 --GGCACCATCGATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTT 396 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || |||||| ||||| |||||| ||| || || || |||| || Sbjct 395 TCAATTGCACGGAATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGG 336 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCT 16581 | | ||||||||| ||||| || || || || || || || || || ||||| ||| | Sbjct 335 AGAGAATACATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA-CG 277 Query 16582 AGCTTCGGATATTTG----TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTA 16637 ||||| || | ||| | |||| | |||| || || | ||||| ||| | Sbjct 276 GGCTTCAGAGACTTGAATCTCTTTCA---TGAAACGATT-AGCAAGATTTTCAAGAACAA 221 Query 16638 TTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATC 16695 | ||||| ||| ||||| || ||||| | ||| |||| |||| || ||| | | Sbjct 220 TACCATCAGAAGCAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAG 161 Query 16696 TGAAAG-TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 | |||| | | ||| | | ||||| ||| | ||| || |||||| | ||||| | Sbjct 160 TTAAAGATGTCTCCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGA 101 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || || |||| || || ||||||| ||| || | ||| ||| ||||||| Sbjct 100 AGGACGCTTCAGCTTTCTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACA 44 >seq12544 Length=28726 Score = 114 bits (126), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTT---CAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 ||||||||||| ||||||||||||| |||||||||||||||| || | |||||||| Sbjct 26353 TTTTGATATTCCCTAACTCTCTTTTTCTCAAAGAAATTTGTTTTCCCATGAAATGAAATC 26294 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 ||| || ||| |||||||||| || ||| | | || ||||| | | | | Sbjct 26293 AATTCTATCCAATTAAAAGGATTTGAAACACCATAACCTATCTCACATCCAAGTGCACCC 26234 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || |||||||| || |||||||| | ||| || || | |||||| | ||||| |||| | Sbjct 26233 AAAAATCTATCAGCAACAAATTCAACATATTGACTCTTGAAATCATAATTCATACCTACT 26174 Query 16121 AA 16122 || Sbjct 26173 AA 26172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461833610524000