Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7113 192 6e-44 seq12544 89.7 5e-13 >seq7113 Length=4078 Score = 192 bits (212), Expect = 6e-44 Identities = 565/859 (66%), Gaps = 27/859 (3%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| || | |||||| || |||||||| || ||||| |||| | ||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 13972 TTCCATAA-AATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 14029 |||||| ||||||| ||||||| ||| | | ||||| ||||| || ||| | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCA-ACACCATAAACTTTCTCACATCCAAGTGCACCC 789 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 | |||||||| |||| || ||||| |||||| |||||||||||| |||||||||| | Sbjct 788 AACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACT 729 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | || || | | || | ||||| |||| || || || || || | Sbjct 728 AAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACG 669 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || ||| | || | | | | | || ||| | | | | |||||| || Sbjct 668 ATCCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAACAAGCG 609 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 ||||| |||||||| || ||||||| || | ||||||||| ||||||||||| ||| Sbjct 608 AAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCCGGGC 549 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCC 14328 || || || |||||||| | ||| || || | ||| ||| |||||| ||||| || || Sbjct 548 ATTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAGAAAATCCC 490 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATC 14386 ||||| ||| || || ||||||| || || | || | | || ||| Sbjct 489 TTCAACACAAGCGAAAGCAATTAATCTTT---CANA--------TTCGGCACCATCGATC 441 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||| || ||||| || | ||| || || | | || ||||||||||| ||| ||| Sbjct 440 CATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAAT 381 Query 14447 AA--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 || |||| || ||| ||| ||||| || || | || | |||||||| Sbjct 380 AATCGTGTTTTTTGAACAGAGT-CTT-TTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 14505 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14564 | || || |||||||| || || || || || || ||||| | ||||| || || Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTT 263 Query 14565 GTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14624 | | |||| || | | || | ||||||| ||| ||||||||| ||| |||| Sbjct 262 GAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAA 203 Query 14625 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC----ATTGCTGAGTTTTTTCCAA 14680 | || || | | || |||| || | ||| || || || || | | | |||| Sbjct 202 AGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGA-TGTCTCCCAA 144 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 | | || ||| | |||||||| ||||| || | ||||| || || ||||||| Sbjct 143 TGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTC 84 Query 14741 TTATACATTACCCATATTT 14759 || |||||| |||| |||| Sbjct 83 TTGTACATTTCCCAGATTT 65 >seq12544 Length=28726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTT---CAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13969 ||||||||||| |||||||| |||| ||||||| || ||||| || | | ||| || Sbjct 26353 TTTTGATATTCCCTAACTCTCTTTTTCTCAAAGAAATTTGTTTTCCCATGAAATGAAATC 26294 Query 13970 TTTTCCATAAAATCAAATGGATTTGTTG-ACATAAACACTTTATCACAACCTAGTTCTAA 14028 ||| || ||| ||| ||||||| || ||| || | ||||| || ||| | Sbjct 26293 AATTCTATCCAATTAAAAGGATTTGAAACACCATAAC-CTATCTCACATCCAAGTGCACC 26235 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 14088 | |||||||| |||| || |||| ||||||| | | |||||| |||||||||||| Sbjct 26234 CAAAAATCTATCAGCAACAAATTCAACATATTGACTCTTGAAATCATAATTCATACCTAC 26175 Query 14089 TA 14090 || Sbjct 26174 TA 26173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481638119591200