Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5800 82.4 6e-11 >seq5800 Length=18681 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||||| || || || || |||||||||||||| || Sbjct 3557 TCCACCACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 3498 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | |||||| || ||| |||||||||| || ||||| || Sbjct 3497 AAGTGTCCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGG 3438 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 3437 AATACCCTCCTTATC 3423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378801507258300