Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7113 138 1e-27 seq5726 114 1e-20 seq14764 91.5 1e-13 seq5800 86.0 6e-12 >seq7113 Length=4078 Score = 138 bits (152), Expect = 1e-27 Identities = 580/896 (65%), Gaps = 39/896 (4%) Strand=Plus/Plus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| |||||||||||| |||| || | || ||| | |||||||| || || || Sbjct 34 AGATTCTGT-ATGTTTCCGATTCAATACCCTCAAATCTGGGAAATGTACAAGAAAGCTGA 92 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 ||| || || ||||| | |||||||| || || || | ||||| || ||||||| | Sbjct 93 AGCGTCCTTCTGGACGGCAGAAGAAGTTGATCTTTCACAAGATCTACGCCATTGGGAGAC 152 Query 57656 C-CTCAAAGAATC--TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 || || | ||| | |||| |||| ||||| | || || || || || || Sbjct 153 ATCTTTAACTTCCGATGAACAACATTTCATTACCCACGTTCTTGCTTTCTTTGCTGCTTC 212 Query 57713 CGATGGTATTGTTAACGAGAAT-TTGGTCGAAAGATTTTCAC--AAGAAGTGCAAGTGAC 57769 |||||||||||| || ||| ||| | || ||||| |||| | ||||| | Sbjct 213 TGATGGTATTGTTCTTGAAAATCTTGCT---AATCGTTTCATGAAAGAGATTCAAGTCTC 269 Query 57770 GGAGGCGAGATGC-TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 || || | ||| |||||||| || ||| | |||||||||||| | ||||| ||||||| Sbjct 270 TGAAGCCCG-TGCGTTTTACGGCTTCCAAATCGCCATTGAAAACATCCATTCCGAAATGT 328 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACG 57888 |||| || ||| | || || ||| | || ||| | | ||| || | ||| | Sbjct 329 ATTCTCTCCTCTTAGAAACCTACATAAAAGACTCTGTTCAAAAAACACGATTATTCCGTG 388 Query 57889 CGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 | || |||||||| || | ||||| || || ||| | | | |||||| | Sbjct 389 CAATTGAAACAATCCCTTGTGTAAAGAAGAAAGCCGACTGGGCCTTAAGATGGATCGATG 448 Query 57949 GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 | ||| | | || || |||| || ||||| || ||||| || |||| Sbjct 449 GTGCC----GAATNT-----GAAAGATTAATTGCTTTCGCTTGTGTTGAAGGGATTTTCT 499 Query 58009 TTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 | || || || || ||| | || || ||| | || |||||||| | |||||||| | Sbjct 500 TCTCCGGAAGTTTCTGC-TCGATTTTCTGGCTTAAAAAACGCGGGTTAATGCCCGGATTA 558 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || ||||| || || || || || || || || ||| ||||| || || || Sbjct 559 ACATTCTCAAACGAATTAATCTCACGAGATGAAGGGCTTCATTGCGATTTCGCTTGTTTA 618 Query 58128 ATGTACTCTCACATTGTCAATAAA---CCGACGCGGGATCGCATCTTGGACATTATCACC 58184 | ||| | | || | || ||| | || | || || | || | | Sbjct 619 CTCTACAC---CCTTCTGAAGAAAAAGCTTACCCAAGAGAAGATTCAAGGGATCGTGAAA 675 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || || || | ||||||| || || ||| || || || || || || | | ||| Sbjct 676 GATGCAGTTGAAATCGAAAGGGAATTCGTCTGTGATGCACTGCCAGTCGCTTTAGTAGGT 735 Query 58245 ATGAACAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 |||||| |||||| || ||||| |||||||| |||||||| || ||| | ||| | Sbjct 736 ATGAACTGTGATTTAATGAGTCAA--TACATTGAATTTGTTGCTGATAGATTGTTGGGTG 793 Query 58303 AACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATT-TTATGAATCTGA 58359 ||| ||| |||| || ||| |||||| ||||||| ||| | ||| Sbjct 794 CACTTGGATGTGAGAAAGT--TTATGGTGTTGCAAATCCTTTTGATTGNGATGGAATTGA 851 Query 58360 TCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 | || | | || || ||||| || || || || | |||| | || ||||||||| Sbjct 852 TTTCATTACAAGGGAAAACAAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAAAAA 907 >seq5726 Length=29179 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || ||||| ||||| || ||| | || |||||| | Sbjct 26914 AAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCC 26855 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| || ||| | ||||||||||| | || || || Sbjct 26854 TCTGACACCATCGACAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGAATTCCACCAGA 26796 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| || ||||| || ||||| || ||||| | ||||| ||| | ||||| Sbjct 26795 CCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTA 26736 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||||||||||||| |||| ||| || |||| || ||| Sbjct 26735 CAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGGT 26684 >seq14764 Length=84029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| ||||| || ||||||||| | || ||||| || Sbjct 1948 ATGCAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCG 1889 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || ||| ||||||||||| | || || |||||| Sbjct 1888 GACACCATTGACAACGTGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACCAG 1829 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || ||| ||||||| | ||| || ||||| || Sbjct 1828 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAAT 1769 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || ||||| || || ||| Sbjct 1768 ATCCAGAAGGAGTCCACCCTTCACCTTGTCCTT 1736 >seq5800 Length=18681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| |||||||| || |||||||| || || |||| || || Sbjct 1731 AAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGT 1790 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | || |||| | | || ||| | ||||||||||| | || || || Sbjct 1791 TCCGATACCATTGACAACGTTAAGACTAAGA-TCCAAGACAAGGAAGGGATTCCCCCAGA 1849 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| |||||| | || |||||||| |||||| | || || || | ||| || Sbjct 1850 CCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTA 1909 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| || || || || ||||| Sbjct 1910 CAATATCCAGAAAGAATCAACACTCCACCTTGTACT 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445112572132800