Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7113 217 2e-51 seq99321 98.7 1e-15 >seq7113 Length=4078 Score = 217 bits (240), Expect = 2e-51 Identities = 594/901 (66%), Gaps = 32/901 (4%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| || || || || | || || || ||||| ||||| |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 33350 TTCCATGA-AATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 |||||| ||||||| ||||| | |||| |||| ||| | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 ||||||||| || || ||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 33469 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 ||||| || || ||||| | ||||| ||| || || |||| | | | Sbjct 727 AAGCGACTGGCAGTGCATCACAG--ACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATG--------TAATAAATGTTTAAACATC 33578 || | || ||||| || || | | | | | || || || | Sbjct 669 GATCCCTTGAA-----TCTTCTCTTGG-GTAAGCTTTTTCTTCAGAAGGGTGTAGAGT-- 618 Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||||| ||||||||||| || || || || |||| ||||||||||| || || || Sbjct 617 AAACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTT 558 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | ||||||||||| || || ||||||||||| || || || ||| |||||| ||| Sbjct 557 AATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTTCCGGAGAAG 498 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 || || ||||| || ||| || ||||| | ||| | || | |||| | ||| Sbjct 497 AAAATCCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCAC---CATCG 444 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || ||||| ||||| ||||| ||||||||||| || ||||| || ||| Sbjct 443 ATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGG 384 Query 33819 AAGAGATAGt-ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | || || |||||| | | ||||| | || || || | | ||| |||||| Sbjct 383 AATA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACAT 325 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| ||||| |||||||||||||| || || || ||||| || | || || | | Sbjct 324 TTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGAC 265 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 || | ||| | || || | || | ||||||| || || |||||| || || Sbjct 264 TTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGC 205 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 ||| || || | || || | || |||| || ||| || | |||| | | | ||| Sbjct 204 AAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCA 145 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||||| || | ||| |||||||| | ||||| || || || || || || Sbjct 144 ATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTT 85 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| | |||||| | | | ||||| || || || ||| ||||| | ||| || Sbjct 84 CTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTT 25 Query 34175 T 34175 | Sbjct 24 T 24 >seq99321 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 |||||||||||| || |||||| | ||||| ||||| ||||||| |||| ||||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 ||| || || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| || ||||| || ||||| |||||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628893815035200