Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7113 176 4e-39 >seq7113 Length=4078 Score = 176 bits (194), Expect = 4e-39 Identities = 582/888 (66%), Gaps = 28/888 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||| || | ||||| || | || || ||||| || || |||| || ||| || | Sbjct 906 TTTTGATACTCCCCAACTC-TCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 11398 CTCCATA--AAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTT 11455 ||||| || | ||||||||| ||| | ||||| ||||| || | | Sbjct 847 TTCCATCNCAATC-AAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCC 789 Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATA 11515 || |||||||| || || ||||| || || ||| ||||||| ||| |||||||||| Sbjct 788 AACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACT 729 Query 11516 AGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 | | | || || | ||| | | || ||| |||| || | ||| ||||| | | Sbjct 728 AAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACG 669 Query 11576 ATCGACGTTATAACTTC-CTTAGAT--GGTGGATGTA-ATAAATGTTTAAACATTAAACA 11631 ||| | || | |||| ||| | | | | | | | || || || | |||||| Sbjct 668 ATC--CCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAG--TAAACA 613 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 || ||||| ||||| | ||||| |||| |||| ||| || || ||||||||||| Sbjct 612 AGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCC 553 Query 11692 GGGCATCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||||| || || |||||||| | || ||||| ||||| || | || || ||||| Sbjct 552 GGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACT--TCCGGAGAAGAAA 495 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || || ||| || || || | || ||||| || || | | | | ||| Sbjct 494 ATCCCTTCAACACAAGCGAAAGCAATTAATCTTT---CANAT---TCGGCACCATCGATC 441 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 ||| || |||||| || |||||||| ||||| || |||||||| || || ||| Sbjct 440 CATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAAT 381 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 || | |||||| | | ||| ||| || || |||| | | | ||||||||| Sbjct 380 AATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTTCG 321 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 ||||| || ||||| || || ||||| || || || || || || || || || Sbjct 320 GAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTTGA 261 Query 11990 ACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 | || ||| ||| | | || | ||| ||| |||||||||||| || ||||| Sbjct 260 ATCTCTTTCATGAAA-CGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAAA 202 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---ATTTATCCCAATC 12105 || || || | || | || || | || ||| || ||||| || | ||||||| Sbjct 201 GAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAATG 142 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 || ||||| ||| | ||| |||||||| | ||||| || || | | || || Sbjct 141 GCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCTT 82 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||||||| |||||| | | | || | ||| || || ||| ||| || Sbjct 81 GTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467837591249600