Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7113 223 5e-53 seq99321 95.1 2e-14 >seq7113 Length=4078 Score = 223 bits (246), Expect = 5e-53 Identities = 605/916 (66%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 |||||| || || || || | || || || ||||| ||||| |||| |||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 35926 TTCCATGA-AATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAA 35984 |||||| |||| || ||||| |||| ||||| ||| | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 ||||||||| || |||||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 36045 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 ||||| || || ||||| | ||||| ||| || || || ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAG--ACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 36103 AATAGATATTACTGTTTCTTCACTCGGTGGA-----TACAATAAATGTTTAAACATCAAA 36157 || | || ||||| || || | | | | | | | | | ||| Sbjct 669 GATCCCT-----TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAA 615 Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||||||||| || || || || |||| ||||||||||| || || || | | Sbjct 614 CAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAAT 555 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||||| || || ||||||||||| || || || ||| || ||| || ||||| Sbjct 554 CCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAA 496 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||| ||||| || || || ||||| | ||| | || | |||||| ||| || Sbjct 495 AATCCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCAC---CATCGAT 442 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| || ||||| ||||| ||||| ||||||||||| ||||| || || ||| || Sbjct 441 CCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 36397 GAGATAGt-ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 | || || |||||| | | ||||| | || || || | | ||| |||||||| Sbjct 381 TA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 | ||||| |||||||||||||| ||||| || ||||| || | || || | | | Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTT 263 Query 36516 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 | | ||| | || || | || | ||||||| || || || ||| || |||| Sbjct 262 GAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAA 203 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAAT 36632 | || || | || || | || |||| || ||| | | |||| | | | ||||| Sbjct 202 AGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAAT 143 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 | ||||| || | ||| |||||||| | ||||| || || || || || || | Sbjct 142 GGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCT 83 Query 36693 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | ||||| | |||||| | | | |||||||| ||||| ||| ||||| | | | |||| Sbjct 82 TGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTTT 23 Query 36753 TTGCAAGGATTGGTTC 36768 || || | ||| || Sbjct 22 CTGTGAGAAGTGGGTC 7 >seq99321 Length=426 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACG 66319 |||||||||||| ||||| ||||| ||||| || || |||||||||||| | ||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 66320 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 66379 ||| || || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 66380 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| |||||||| || || || || ||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657207425045600