Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7113 206 4e-48 seq99321 104 3e-17 >seq7113 Length=4078 Score = 206 bits (228), Expect = 4e-48 Identities = 590/898 (66%), Gaps = 26/898 (3%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 |||||| || || || || | || || || ||||| ||||| |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 49728 TTCCATGA-AATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 49786 |||||| ||||||| ||||| | |||| ||||| ||| | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 ||||||||| || |||||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 ||||| || || || | ||||| ||| || || |||||| | | | Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACGA 668 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT------AAATGTTTAAACATCAAAC 49960 | | || ||||| || || | | || | | | | | | | |||| Sbjct 667 TCCCTTGAA-----TCTTCTCTTGG-GTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAAC 614 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 | ||||||||||| || || || || |||| |||| |||||| || || || | || Sbjct 613 AAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATC 554 Query 50021 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAG 50079 ||||||||| || || ||||||||||| || || || ||| || || || ||||| Sbjct 553 CGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAAA 495 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || ||||| || || || |||| | ||| | || | ||| | ||| ||| Sbjct 494 ATCCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCAC---CATCGATC 441 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || || ||||| ||||| ||||| ||||||||||| || ||||| || ||| || Sbjct 440 CATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAAT 381 Query 50200 AGATAGt-ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 | || || |||||| | | ||||| | || || || | | ||| ||||||||| Sbjct 380 A-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTTC 322 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 ||||| |||||||||||||| || || || ||||| || | || || | | || Sbjct 321 GGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTTG 262 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 | ||| | || || | ||| | ||||||| || || || ||| || ||||| Sbjct 261 AATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAAA 202 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATC 50435 || || | || || | || ||||||| ||| | || |||| | | | ||||| Sbjct 201 GAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAATG 142 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 | ||||| || | ||| |||||||| | ||||| || || || || || || || Sbjct 141 GCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCTT 82 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||| | |||||| | | | ||||| || || || ||| ||||| | ||| ||| Sbjct 81 GTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTT 24 >seq99321 Length=426 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 |||||||||||| ||||| ||||| ||||| || || |||||||||||| ||||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 ||| || || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| |||||||| || || || |||||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717215279237600