Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7113 203 3e-47 seq12544 98.7 1e-15 >seq7113 Length=4078 Score = 203 bits (224), Expect = 3e-47 Identities = 574/867 (66%), Gaps = 43/867 (5%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| || | |||||| || |||||||| || ||||| |||| | ||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 13640 TTCCATAA-AATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAA 13696 |||||| ||||||| |||||| | ||||||| ||| ||||| || ||| | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAAC--TTTCTCACATCCAAGTGCACC 790 Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13756 | ||||||||||||| ||| ||||| |||||| |||||||||||| |||||||||| Sbjct 789 CAACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTAC 730 Query 13757 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTAT 13816 || || || | | || | ||||| |||| || || || ||||| | Sbjct 729 TAAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 13817 AATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876 || | ||| |||| | | | | | || ||| | | | | |||||| || Sbjct 669 GATCCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAACAAGC 610 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||| |||||||| || ||||||| || | ||||||||| ||||||||||| || Sbjct 609 GAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCCGGG 550 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTC 13995 ||| || || |||||||| | ||| || || | |||| || ||||| ||||| || | Sbjct 549 CATTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAGAAAATCC 491 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--AT 14053 | ||||| ||| || || ||||||| || || | || | | || || Sbjct 490 CTTCAACACAAGCGAAAGCAATTAATCTTT---CANA--------TTCGGCACCATCGAT 442 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||| || ||||| || | ||| || || | | || ||||||||||| ||| || Sbjct 441 CCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 14114 TAAATATTCCTTCTCTTT------AGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||| || | | ||| ||| ||| ||||| || || | || | ||| Sbjct 381 TAA----TCGTGTTTTTTGAACAGAGT-CTT-TTATGTAGGTTTCTAAGAGGAGAGAATA 328 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCCG 14226 |||||| || || |||||||| || || || || || || ||||| ||| | ||||| | Sbjct 327 CATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA-CGGGCTTCAG 269 Query 14227 ACCATTGTA---CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| | ||| | | || | | || | ||||||| ||| ||||||||| Sbjct 268 AGACTTGAATCTCTTTCATG---AAACGATTAGCAAGATTTTCAAGAACAATACCATCAG 212 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGA--GTT 14340 ||| ||||| || || | | || |||| || | ||| || || ||| | | Sbjct 211 AAGCAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATG 152 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | | ||||| | || ||| | |||||||| ||||| || | ||||| || || Sbjct 151 TCTCCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTT 92 Query 14401 CAGCTTTTTTATACATTACCCATATTT 14427 ||||||| || |||||| |||| |||| Sbjct 91 CAGCTTTCTTGTACATTTCCCAGATTT 65 >seq12544 Length=28726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTT---CAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 ||||||||||| |||||||| |||| ||||||| || ||||| || | | ||| || Sbjct 26353 TTTTGATATTCCCTAACTCTCTTTTTCTCAAAGAAATTTGTTTTCCCATGAAATGAAATC 26294 Query 13638 TTTTCCATAAAATCAAATGGATTT-ATTGACATAAACACTTTATCACAACCTAGTTCTAA 13696 ||| || ||| ||| |||||| | || ||| || | ||||| || ||| | Sbjct 26293 AATTCTATCCAATTAAAAGGATTTGAAACACCATAAC-CTATCTCACATCCAAGTGCACC 26235 Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13756 | ||||||||||||| ||| |||| ||||||| | | |||||| |||||||||||| Sbjct 26234 CAAAAATCTATCAGCAACAAATTCAACATATTGACTCTTGAAATCATAATTCATACCTAC 26175 Query 13757 TA 13758 || Sbjct 26174 TA 26173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479024358956000