Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7113 199 4e-46 seq12544 95.1 1e-14 >seq7113 Length=4078 Score = 199 bits (220), Expect = 4e-46 Identities = 565/856 (66%), Gaps = 21/856 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| || | |||||| || ||||| || || ||||| |||| | ||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 13428 TTCCATAA-AATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 13485 |||||| |||| || ||||||| ||| | | ||||| ||||| || ||| | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCA-ACACCATAAACTTTCTCACATCCAAGTGCACCC 789 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 || ||||||||||||| ||| ||||| |||||| |||||||||||| |||||||||| | Sbjct 788 AACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACT 729 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 | || || | | || | | ||||| |||| || || || || || | Sbjct 728 AAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACG 669 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 || | ||| | || | | | | | || ||| | | | | |||||| || Sbjct 668 ATCCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAACAAGCG 609 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 ||||| |||||||| || ||||||| || | ||||||||| ||||||||||| ||| Sbjct 608 AAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCCGGGC 549 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCC 13784 || || || |||||||| | ||| || || | ||| ||| |||||| ||||| || || Sbjct 548 ATTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAGAAAATCCC 490 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 ||||| ||| || || |||| || || || | || | | ||||| Sbjct 489 TTCAACACAAGCGAAAGCAATTAATCTTT---CANATTCGGCACCATCG------ATCCA 439 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || ||||| || | ||| || || | | || |||||||| |||||| |||||| Sbjct 438 TCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAATAA 379 Query 13905 --ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 |||| || ||| ||| ||||| || || | || | ||||||||| Sbjct 378 TCGTGTTTTTTGAACAGAGT-CTT-TTATGTAGGTTTCTAAGAGGAGAGAATACATTTCG 321 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || || |||||||| || || || || || || ||||| | ||||| || ||| Sbjct 320 GAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTTGA 261 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 | ||| || | | || | |||||| ||||||||||||| ||| ||||| Sbjct 260 ATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAAAG 201 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGA--GTTTTTTCCAATCG 14139 || || | | || |||| || | ||| || || ||| | | | | ||||| | Sbjct 200 AAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAATGG 141 Query 14140 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199 || ||| | |||||||| ||||| || | ||||| || || ||||||| || Sbjct 140 CGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCTTG 81 Query 14200 TACATTACCCATATTT 14215 |||||| |||| |||| Sbjct 80 TACATTTCCCAGATTT 65 >seq12544 Length=28726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTT---CAAAAAAGTTAGTTTTACCTTCCAGTGATATA 13425 ||||||||||| |||||||| |||| |||| || || ||||| || | | ||| || Sbjct 26353 TTTTGATATTCCCTAACTCTCTTTTTCTCAAAGAAATTTGTTTTCCCATGAAATGAAATC 26294 Query 13426 TTTTCCATAAAATCGAATGGATTTGTTG-ACATAAACACTTTATCACAACCTAGTTCTAA 13484 ||| || ||| || ||||||| || ||| || | ||||| || ||| | Sbjct 26293 AATTCTATCCAATTAAAAGGATTTGAAACACCATAAC-CTATCTCACATCCAAGTGCACC 26235 Query 13485 TAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13544 || ||||||||||||| ||| |||| ||||||| | | |||||| |||||||||||| Sbjct 26234 CAAAAATCTATCAGCAACAAATTCAACATATTGACTCTTGAAATCATAATTCATACCTAC 26175 Query 13545 TA 13546 || Sbjct 26174 TA 26173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477886829877600