Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7113 237 2e-57 seq99321 98.7 1e-15 >seq7113 Length=4078 Score = 237 bits (262), Expect = 2e-57 Identities = 598/899 (67%), Gaps = 28/899 (3%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 |||||| || || || || | || || || ||||| || || |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 41833 TTCCATGA-AATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 |||||| ||||||| ||||| | |||| ||||| ||| | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 ||||||||| || | ||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 41952 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 ||||| || || ||||| | ||||| ||| || || || ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAG--ACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 42010 AATAGATCTTACTGTTTCTTCACTCGGTGGA-----TACAATAAATGTTTAAACATCAAA 42064 || | || ||||| || || | | | | | | | | | ||| Sbjct 669 GATCCCT-----TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAA 615 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||||||||| || || || ||||||| ||||||||||| || || || | | Sbjct 614 CAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAAT 555 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||||| || || ||||||||||| || || || ||| || ||| || ||||| Sbjct 554 CCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAA 496 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || || || ||||| | ||| | || | |||||| ||| || Sbjct 495 AATCCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCAC---CATCGAT 442 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| || ||||| ||||| ||||| ||||||||||| || ||||| || ||| || Sbjct 441 CCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 42304 GAGATAGt-ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 | || || |||||| | | ||||| | || || || | | ||| |||||||| Sbjct 381 TA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | ||||| |||||||||||||| || || || ||||| || | ||| || | || | Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTT 263 Query 42423 GTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 | | ||| | || || | ||| | |||||| || || || ||| || |||| Sbjct 262 GAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAA 203 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAAT 42539 | || || | || || | || |||| || ||| || | |||| || | | ||||| Sbjct 202 AGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAAT 143 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | ||||| || | ||| ||||||||| ||||||| || || ||||| || || | Sbjct 142 GGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCT 83 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 | ||||| | |||||| | | | |||||||| || || ||| ||||| | ||| ||| Sbjct 82 TGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTT 24 >seq99321 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 |||||||||||| ||||| |||| ||||| || || |||||||||||| ||||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 ||| ||| || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||| |||||||| || || || || ||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670154806578400