Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5726 136 3e-27 seq14764 116 3e-21 seq16595 95.1 9e-15 >seq5726 Length=29179 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | || |||||||| || || || || || ||||||||||| Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||| || ||| | || | |||||||||||| |||| Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| |||| ||| | || ||||| || ||| || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACC 26864 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||| ||| |||||||| ||||| || ||||| || || || ||||| || Sbjct 26865 TCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| | || || || || |||||||| |||||||| ||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| ||| || || ||| | ||||||||||| || || |||| Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| | || || | |||||||| || | | || || Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || ||||| || || ||||| || || |||||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| ||||| || || || ||||||||||| ||| | | | ||||| Sbjct 1967 AACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTC 2026 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || || | ||||| | || || || |||||||| || ||||| Sbjct 2027 AAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 2086 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || | || ||| | || ||||| || | | || || || |||||||| || || Sbjct 2087 AATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTT 2146 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || ||||||||| Sbjct 2147 TCCAGTGAGAGTCTTGACGAAGATTTGCATA 2177 >seq16595 Length=7721 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| | |||||| |||||| | ||||||||||| || || ||||||||||| | Sbjct 609 CGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCT 550 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| || ||| | || || | || ||||| || | | || || || | |||| Sbjct 549 TGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTAA 490 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || || || ||||| || || |||||||| Sbjct 489 TGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||| || || || ||||| ||||| ||||| || || || | || || | || Sbjct 1932 TGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTC-CATCCTCAAGCTG 1874 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||||||| || ||||| ||||| || || || || ||| || Sbjct 1873 CTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTT 1814 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| ||| | || |||||||| | || || || ||||||||||| || || || Sbjct 1813 GGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGT 1754 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 1753 CAATGTCTTGACAAATATCTGCAT 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361661254316940