Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7113 197 1e-45 >seq7113 Length=4078 Score = 197 bits (218), Expect = 1e-45 Identities = 568/862 (66%), Gaps = 27/862 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||||||||| || | |||||| || ||||| || |||||||| ||| Sbjct 921 GACATAACAGAAGCTTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCT 862 Query 12905 TCTAACGAAATATTTTCCATAA-AATCGAAAGGATTTTTCGAACAATAGTATTTTTTACA 12963 | ||| ||||| |||||| |||| ||||||||| || ||| ||| | ||| Sbjct 861 TGTAATGAAATCAATTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACA 802 Query 12964 CCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 || | | | |||||||| ||||||||||| || ||||| || ||||||||||||| Sbjct 801 TCCAAGTGCACCCAACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACA 742 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 |||||| |||| ||| || |||| || || | || | |||| || ||||| Sbjct 741 GTTCATACCTACTAAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAAC 682 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGG---AGGATTTGAT--AGATGC 13138 ||| || | || | || ||| | |||||| ||| || ||| | ||| | Sbjct 681 TGCATCTTTCACGA--TCCCTT-GAATCTTCTCT--TGGGTAAGCTTTTTCTTCAGAAGG 627 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | | ||| || ||||| || || | |||||||||| |||| |||||| Sbjct 626 GTGTAGAGTAAACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTT 567 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCC--AAAATATAGCAGCAAACG 13256 || ||||||| || ||||| | ||| |||||||||| || ||||| ||||| |||| Sbjct 566 GAGAATGTTAATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAG-AAAC- 509 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 || || || || || |||||||| || || || || || |||||| || || Sbjct 508 TTCCGGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCA-NATTCG--- 453 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || || ||||| || |||||||| ||||| | || || || || Sbjct 452 -----GCACCATCGATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTG 398 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 |||| ||||| ||||| |||||| | |||| || || || |||| | Sbjct 397 TTTCAATTGCACGGAATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGA 338 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | ||||||||| ||||| || ||||| || || |||||||| || ||||| | Sbjct 337 GGAGAGAATACATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCAC 278 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 || || || || |||| || || | | || | ||||| ||| || | Sbjct 277 GGGCTTCAGAGACTTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATAC 218 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAAT-AAAttttttt--tCGTTTTCTG 13613 | ||| ||||||||| |||||||| | ||| |||| |||| || || ||| | Sbjct 217 CATCAGAAGCAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTA 158 Query 13614 ACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAG 13673 | | | ||||| | | ||||| ||| | ||| || || || | ||||| || | Sbjct 157 AAGATGTCTCCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGG 98 Query 13674 AAGCAACAGCCTTCTTATACAT 13695 | || |||| ||||| ||||| Sbjct 97 ACGCTTCAGCTTTCTTGTACAT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430366060150680