Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14764 136 9e-27 seq5726 132 1e-25 seq7113 125 2e-23 seq5800 123 6e-23 seq16595 114 3e-20 >seq14764 Length=84029 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| || || ||||| || || || |||| ||||| | || || Sbjct 1964 AAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATC 2023 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || |||||||| ||||| || | |||||| ||||| || || ||||| || || || Sbjct 2024 TTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTC 2083 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| ||| ||||| || | ||| || | || ||||| | |||||||| Sbjct 2084 CTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGT 2143 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || || ||||| Sbjct 2144 CTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | || || || || | || || ||||| ||||| || ||||| | Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||||||||| ||||| || || || | | || ||||| || || Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || || ||||| | ||| || || |||| ||| || | || || Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| ||||| ||||| || || || ||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| ||||| || |||| | ||| | ||| || Sbjct 1736 AAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATC 1795 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||||||||| | |||||| || ||||| || || ||||| || || Sbjct 1796 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTC 1855 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 || || || | || || || || | ||| || | || | || ||||| | || || | Sbjct 1856 TTGGATTTTCGTCTTCACGTTGTCAATGGTGTC-CGAGCTCTCAACCTCCAAGGTGATCG 1914 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || ||||||||||| Sbjct 1915 TCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 >seq5726 Length=29179 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | | ||| || | ||| | || ||||| ||||| || || || |||| Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| ||||||||||| || ||||| || | ||||| || || || Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || || ||||| | || ||||| || | ||| || | ||| ||| Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACC 26864 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || || || ||||| || || |||||||||||| Sbjct 26865 TCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTG 26915 >seq7113 Length=4078 Score = 125 bits (138), Expect = 2e-23 Identities = 395/605 (65%), Gaps = 19/605 (3%) Strand=Plus/Plus Query 268691 AACCCAGATAGATT-TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAA 268749 |||||||| ||||| ||| || ||||| || || | | | || ||| |||||||| Sbjct 25 AACCCAGACAGATTCTGT-ATGTTTCCGATTCAATACCCTCAAATCTGGGAAATGTACAA 83 Query 268750 ACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGA 268809 | || | || || || ||||| | ||||||||| ||||| || | || || | Sbjct 84 GAAAGCTGAAGCGTCCTTCTGGACGGCAGAAGAAGTTGATCTTTCACAAGATCTACGCCA 143 Query 268810 TTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTT 268865 |||| | | ||||| | || ||| || |||| || | | ||||||| || | Sbjct 144 TTGGGAGACATCTTTAACTTCCGATGAAC-AACATTTCATTACCCACGTTCTTGCTTTCT 202 Query 268866 TTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTAC 268925 |||| | | ||||||||| ||| |||||||| | | ||| ||||| | | Sbjct 203 TTGCTGCTTCTGATGGTATTGTTCTTGAAAATCTTGCTAATCGTTTCATGAAAGAGATTC 262 Query 268926 AGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAG 268985 | | |||||||| | |||||||| ||||| || || || ||||| || ||||| | Sbjct 263 AAGTCTCTGAAGCCCGTGCGTTTTACGGCTTCCAAATCGCCATTGAAAACATCCATTCCG 322 Query 268986 AGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTAT 269045 | ||||| ||| | |||| || || ||| | || |||| | | || ||| Sbjct 323 AAATGTATTCTCTCCTCTTAGAAACCTACATAAAAGACTCTGTTCAAAAAACACGATTAT 382 Query 269046 TTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 | | | || ||| || ||||| | || ||| | || ||||| | | ||||| Sbjct 383 TCCGTGCAATTGAAACAATCCCTTGTGTAAAGAAGAAAGCCGACTGGGCCTTAAGATGGA 442 Query 269106 TAAACGATAGCGCGCCTTACGGA---GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 | |||| | || || | ||||| ||| ||||||| || ||| ||||| | Sbjct 443 T---CGATGGTGC------CGAATNTGAAAGATTAATTGCTTTCGCTTGTGTTGAAGGGA 493 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 | ||||| || || ||| | | || || ||| | || ||| | || | ||||| | Sbjct 494 TTTTCTTCTCCGGAAGTTTCTGCTCGATTTTCTGGCTTAAAAAACGCGGGTTAATGCCCG 553 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 ||||||| ||||| |||||||| || | || ||||| | || ||||| ||||||| Sbjct 554 GATTAACATTCTCAAACGAATTAATCTCACGAGATGAAGGGCTTCATTGCGATTTCGCTT 613 Query 269283 GTTTA 269287 ||||| Sbjct 614 GTTTA 618 >seq5800 Length=18681 Score = 123 bits (136), Expect = 6e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||||| || || | ||| ||||||||||| ||||| ||||| Sbjct 1963 ATTCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCG 1904 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || ||||| ||||| ||||| || || | | |||||| || || Sbjct 1903 GCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGG 1844 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | ||||||| | || Sbjct 1843 GGAATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCG 1784 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || || || || || || || || || || |||||||| Sbjct 1783 ACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTT 1731 Score = 123 bits (136), Expect = 6e-23 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | ||||| || |||||||| || |||||| Sbjct 3559 ATTCCACCACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 3500 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || ||||| |||||||| || ||||| || || ||||| ||||| || Sbjct 3499 GCAAGTGTCCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGC 3440 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 || || || || |||||||||||||| | ||| ||||| |||| Sbjct 3439 GGAATACCCTCCTTATCCTGAATCTTAGTTTTCACATTATCTA 3397 >seq16595 Length=7721 Score = 114 bits (126), Expect = 3e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || || || ||||| |||| | || | || || Sbjct 1942 AAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATC 1883 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||||||||| | | ||| || || || || || || || ||||| Sbjct 1882 CTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATC 1823 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||||||||| | || ||||| || | |||||| || | || ||||| | ||||| | Sbjct 1822 CTGAATCTTGGTCTTAACATTATCAATGGTATCTG-AGCTCTCCACCTCCAAGGTAATGG 1764 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||| | ||| || ||||||||||||||| Sbjct 1763 TCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| |||||||||||||| || || | | || ||||| || || |||||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || ||||| | ||| || || || | ||| || | || ||||| || ||| Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| || || || ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149667366056720