Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5726 125 6e-24 seq16595 104 2e-17 seq14764 104 2e-17 >seq5726 Length=29179 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | |||||| || | ||| |||||||| || | ||| ||||| Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || || ||||||||| | || || | | ||| || ||||| ||| Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || | |||||| | ||| ||||||| | || || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACC 26864 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||||||| || || || |||||||| ||||||||||| Sbjct 26865 TCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 26911 >seq16595 Length=7721 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || |||||||| | ||||| || | |||||||||||| ||||| ||||| ||| Sbjct 607 TCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTG 548 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | | | ||||||| ||||| || | || ||| Sbjct 547 TCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTAATG 488 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||||||| |||||||| ||||| ||||| Sbjct 487 GTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq14764 Length=84029 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || || | || | ||| | ||| || || ||||| | ||| || ||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || || || ||||| | ||||| || | |||||||||||| ||| Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || | |||||| | | | ||||| | ||||| Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || || ||||| || | ||| ||||| | ||| | ||| || Sbjct 1968 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCA 2027 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| ||||||| || || ||||||||||| ||||| || || ||||| | | Sbjct 2028 AGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 2087 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||| || || | | ||||| | || || || | || || || ||| Sbjct 2088 ATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTT 2147 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || ||||| ||||| Sbjct 2148 CCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447633668882400