Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq107391 149 1e-31 seq39179 105 1e-18 >seq107391 Length=530 Score = 149 bits (164), Expect = 1e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| || || ||||| || || |||||| |||||||| | || ||||| Sbjct 308 GATAACATTCAAGGGATTACAAAGCCTGCAATTCGTCGTTTGGCTCGTAGGGGAGGAGTT 367 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| || |||| ||||| | ||||| |||||||||||||||| | || Sbjct 368 AAGAGAATCAGTGGTTTAATCTACGAAGAAACTCGTGGTGTTTTGAAGATCTTCTTGGAG 427 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||||| || || |||| | | |||||||| ||| || Sbjct 428 AATGTAATTCGTGATGCTGTTACTTATACTGAACATGCTAGAAGGAAGACTGTTACCGCC 487 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||| | |||||||| | || | ||||| |||| Sbjct 488 ATGGATGTTGTCTATGCTCTTAAGAGGCAAGGTCGTA 524 >seq39179 Length=216 Score = 105 bits (116), Expect = 1e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||| || || || || |||||| |||| ||| | ||||||||| Sbjct 72 GATAACATTCAGGGAATCACAAAACCTGCAATTCGTCGTTTGGCACGTAGAGGTGGAGTC 131 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || |||||| | || ||||| | ||||| |||||||||||| ||| | || Sbjct 132 AAGAGAATCAGCGGATTGATTTACGAAGAAACTCGTGGTGTTTTGAAGATATTCTTGGAG 191 Query 16580 ACCGTTATCCATGATGCT 16597 | || || | ||||||| Sbjct 192 AATGTGATTCGTGATGCT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78967915216620