Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7113 129 6e-25 >seq7113 Length=4078 Score = 129 bits (142), Expect = 6e-25 Identities = 310/461 (67%), Gaps = 25/461 (5%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| || | |||||| || || || |||||||| || |||| ||||| || | Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 21244 TTCCATAA-AATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||| ||||||| |||||| || | | | ||| | ||| || ||| | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | |||||||| || |||||||| || ||||||| |||||| ||||| |||||||| | | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | || || || || | || | | || || || | || |||||| | Sbjct 727 AAGCGACTGGCAGTGCAT----CACAGACGAATTCCCTTTCGAT-----TTCAACTGC-A 678 Query 21423 TATTT-ATTATCC--TAGATGTACTAGGGGGATACAATAATTGTTTAAAC--------AT 21471 | ||| | |||| | || | || ||| || | || || | | | Sbjct 677 TCTTTCACGATCCCTTGAATCTTCTCTTGGG-TAAGCTTTTTCTTCAGAAGGGTGTAGAG 619 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||| || ||||| ||||| | |||||||| | |||||||| || || ||||| Sbjct 618 TAAACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGT 559 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAA 21590 ||| ||||||||||| || | ||||| | ||| || || || ||| || ||| || | Sbjct 558 TAATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGA 500 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 ||||||| || ||||| ||| || |||| ||||| |||| Sbjct 499 AGAAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCA 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531120634501600