Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5726 105 6e-18 seq14764 84.2 2e-11 >seq5726 Length=29179 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || || ||||| |||| || ||| | || ||| | || | ||||| Sbjct 26915 CAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATC 26856 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 26855 CTCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGA 26796 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | ||||||| || ||| |||||||| ||||||| | | || || || Sbjct 26795 CCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTA 26736 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| ||| | ||| |||| || || | ||||| || Sbjct 26735 CAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq14764 Length=84029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 |||||| | || || ||||| | || || || | ||||| ||||| | ||| | | Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||||||| || | |||||| ||||| ||||||||||| || || || |||| Sbjct 2920 --GACACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATC 2863 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | ||| | | || | || || || ||||| ||||||| | | | |||||| | Sbjct 2862 AGCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACA 2803 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||||| || ||| |||| || || || Sbjct 2802 ACATTCAAAAAGAGTCAACTCTCCACCTTGTTCT 2769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477960321924800