Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7113 138 3e-27 >seq7113 Length=4078 Score = 138 bits (152), Expect = 3e-27 Identities = 312/467 (67%), Gaps = 4/467 (1%) Strand=Plus/Plus Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 ||||| || ||| |||||||| |||||||| || ||| || || | || || ||| Sbjct 469 ATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCCGGAAGTTTCTGCTCGATTTTCTGG 528 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || |||||||| | | ||||| || |||| || ||||| || ||||| |||||| Sbjct 529 CTTAAAAAACGCGGGTTAATGCCCGGATTAACATTCTCAAACGAATTAATCTCACGAGAT 588 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT 22677 || || |||||| |||||| || ||| | || || | | | | | | || ||| Sbjct 589 GAAGGGCTTCATTGCGATTTCGCTTGTTTACTCTAC---ACCCTTCTGAAGAAAAAGCTT 645 Query 22678 CCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATT 22737 | | || | | | | || | | | ||||||||||| | ||| | ||| | Sbjct 646 ACCCAAGAGAAGATTCAAGGGATCGTGAAAGATGCAGTTGAAATCGAAAGGGAATTCGTC 705 Query 22738 TGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATT 22797 || || || | ||||| | | | ||||| || || | ||||||| ||| ||| Sbjct 706 TGTGATGCACTGCCAGTCGCTTTAGTAGGTATGAACTGTGATTTAATGAGTCAATACATT 765 Query 22798 AAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTT 22857 |||||||||| ||| | | || | |||| || | || || |||| || | Sbjct 766 GAATTTGTTGCTGATAGATTGTTGGGTGCACTTGGATGTGAGAAAGTTTATGGTGTTGCA 825 Query 22858 AATCCATTTGAATG-GATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 ||||| ||||| || ||||||| | |||||| | |||| || || |||||||| || || Sbjct 826 AATCCTTTTGATTGNGATGGAATTGATTTCATTACAAGGGAAAACAAATTTCTTTGAGAA 885 Query 22917 AAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATG 22963 |||||||| || || |||||||| ||||||| | ||||||| Sbjct 886 GAGAGTTGGGGAGTATCAAAAAGCTTCTGTTATGTCTAGCTTGAATG 932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301394113759880