Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5726 111 1e-19 seq14764 86.0 5e-12 >seq5726 Length=29179 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| |||| || ||| | || ||| | || || || | Sbjct 26915 CAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATC 26856 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 26855 CTCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGA 26796 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| | || |||| || ||| || ||||| ||||||| | | | || ||||| Sbjct 26795 CCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTA 26736 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| || ||||||| ||| | |||||||||| || Sbjct 26735 CAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq14764 Length=84029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || ||||||||||| Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||||||||| || || || ||||| Sbjct 2920 GACACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 2861 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || |||||||| ||||||| | | | | ||| || ||| Sbjct 2860 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAAC 2801 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||||||||| || || Sbjct 2800 ATTCAAAAAGAGTCAAC 2784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429321156587700