Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5726 129 4e-25 seq14764 102 5e-17 seq16595 87.8 1e-12 >seq5726 Length=29179 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| || | ||||||||||||||| ||||| || || |||||||||| Sbjct 26684 ACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGC 26743 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || | |||||||||||| || || || |||||||| || | || Sbjct 26744 GAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGG 26803 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | || || || |||||| Sbjct 26804 AATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || ||||| || || | |||||||||||| |||||||| || Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||||||||||| ||| |||||| || || |||||||||| Sbjct 1948 TACCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAG 2007 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||||| ||||| || | | || ||||| | || Sbjct 2008 CAAGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 2067 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| ||| || ||||| | | || ||| ||| |||| Sbjct 2068 GAATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAA 2127 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||| || || || | || || ||||| || ||||| Sbjct 2128 CCTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| ||||| | || | || ||||| ||| |||||||| ||||| || | Sbjct 2753 ACCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGC 2812 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || |||| ||| ||||| || || || | ||||| ||||| | || Sbjct 2813 AAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGG 2872 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||| || || || || || | | || ||| ||| || || Sbjct 2873 AATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGAC 2932 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | || || || ||||| || | |||||||||||| || ||||| Sbjct 2933 TTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||||||||| ||||||||||| || |||||||||| Sbjct 2176 TACCACCACGCAGACGGAGAACCAAATGAAGAGTACTCTCCTTTTGGATGTTGTAATCAG 2235 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||||| || || || || | | ||| ||||| | || Sbjct 2236 CCAAAGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTTTGCTGATCTGGGG 2295 Query 38209 GGA 38211 ||| Sbjct 2296 GGA 2298 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| |||||| || ||||||||||||| |||| ||| | || || | || Sbjct 1746 TGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGC 1805 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || | | || || || | ||||| ||||| ||||| ||||| Sbjct 1806 TTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTC 1865 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | | || || || ||||| || || || || || || || || Sbjct 1866 GTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCTGTG 1925 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||||||||| Sbjct 1926 AGAGTCTTGACGAATATCTGCAT 1948 >seq16595 Length=7721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||||||| || || ||||||| ||| |||| | || || | || Sbjct 1932 TGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGC 1873 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || | || || || || | ||| | || || || ||| ||| || Sbjct 1872 TTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTTG 1813 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | |||||| || || || || || ||||| || || || ||| Sbjct 1812 GTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTC 1753 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||||||||| Sbjct 1752 AATGTCTTGACAAATATCTGCAT 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334468198289540