Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7113 235 7e-57 seq99321 98.7 1e-15 >seq7113 Length=4078 Score = 235 bits (260), Expect = 7e-57 Identities = 610/917 (67%), Gaps = 30/917 (3%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 |||||| || || || || | || || || ||||| ||||| |||| |||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 32429 TTCCATGA-AATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 32487 |||||| |||| || ||||| | |||| ||||| ||| | | |||| | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 ||||||||| || |||||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 32548 GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 ||||| || || ||||| | ||||| ||| || || || ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAG--ACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 32606 AATAGATCTTACTGTTTCTTCACTCGGTGGA-----TACAATAAATGTTTAAACATCAAA 32660 || | || ||||| || || | | | | | | | | | ||| Sbjct 669 GATCCCT-----TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAA 615 Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||||||||| || || || || |||| ||||||||||| || || || | | Sbjct 614 CAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAAT 555 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||||| || || ||||||||||| || || || ||| || ||| || ||||| Sbjct 554 CCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAA 496 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 ||| ||||| || || || ||||| | ||| | || | |||| | ||| || Sbjct 495 AATCCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCAC---CATCGAT 442 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| || ||||| ||||| ||||| ||||||||||| ||||| || || ||| || Sbjct 441 CCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 32900 GAGATAGt-ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | || || |||||| | | ||||| | || || || | | ||| |||||||| Sbjct 381 TA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATC 33017 | ||||| |||||||||||||| ||||| || ||||| || ||| | || || | | Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA-CGGGCTTCAGAGACT 264 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || | ||| | || || | || | ||||||| || || || ||| || ||| Sbjct 263 TGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCA 204 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 33134 || || || | || || | || |||| || ||| || | |||| | | | |||| Sbjct 203 AAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAA 144 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 | | ||||| || | ||| |||||||| | ||||| || || || || || || Sbjct 143 TGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTC 84 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 || ||||| | |||||| | | | |||||||| ||||| ||| ||||| | ||| ||| Sbjct 83 TTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTT 24 Query 33255 TTTGCAAGGATTGGTTC 33271 | || || | ||| || Sbjct 23 TCTGTGAGAAGTGGGTC 7 >seq99321 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACG 63330 |||||||||||| ||||| ||||| ||||| || || |||||||||||| ||||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 63331 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 ||| || || || | ||| || || ||||| ||| ||| | || ||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| |||||||| || || || || ||||| || |||| | ||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632702620264000