Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14764 114 1e-20 seq5800 113 4e-20 >seq14764 Length=84029 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || |||||| | || || || | ||||| | || || ||| || Sbjct 1948 ATGCAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCG 1889 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| |||||| ||||| |||||||| || |||||||| Sbjct 1888 GACACCATTGACAACGTGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACCAG 1829 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | ||||||| ||| ||| ||| ||||||||| Sbjct 1828 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAAT 1769 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1768 ATCCAGAAGGAGTCCACCCTTCA 1746 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | |||||||| | ||||| ||||||| ||| || Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || ||| | || ||||||||||| |||||||| || Sbjct 2920 GACACCATAGACAACGTCAA--AACCAAGA--TCCAAGACAAAGAAGGAATTCCACCAGA 2865 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || || || || || ||| ||||||||| || ||| | | ||| || Sbjct 2864 TCAGCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTA 2805 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||| || || || || | || || | ||||||| || Sbjct 2804 CAACATTCAAAAAGAGTCAACTCTCCACCTTGTTCTCCGTTTAAGAGGTGG 2754 >seq5800 Length=18681 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | ||||| ||| | || || |||| || ||| || Sbjct 1733 AATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGTTC 1792 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 1793 CGATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 1852 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || ||||| |||| |||| ||||| | | ||| ||||| Sbjct 1853 ACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTACAA 1912 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || |||||||| || || || | || || | || ||||| |||| Sbjct 1913 TATCCAGAAAGAATCAACACTCCACCTTGTACTCCGTCTCAGAGGTGGAA 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432708305752100