Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7113 284 1e-71 >seq7113 Length=4078 Score = 284 bits (314), Expect = 1e-71 Identities = 610/896 (68%), Gaps = 35/896 (4%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | |||||| || ||||||||| | || |||||||||||||| || |||| Sbjct 919 CATAACAGAAGCTTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTG 860 Query 92850 CAAAGATATCGAAT---TCACTAGTGATTGGATTCTTGGCGTTATAATACTTT-TCACCG 92905 || || ||| | | || | | | ||||| | |||| ||||| |||| Sbjct 859 TAATGAAATCAATTCCATCNCAATCAAAAGGATTTGCAACACCATAA-ACTTTCTCAC-- 803 Query 92906 ATCAACTCGTAC--AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 ||| | | || || ||||||||||| |||||||| ||||| ||| ||| ||||||| Sbjct 802 ATCCAAGTGCACCCAACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCAC 743 Query 92964 AATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 | ||||| |||| | | || || || || || | ||| || | |||||| ||| Sbjct 742 AGTTCATACCTACTAAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAA 683 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATT 93081 | || ||||||| ||| || | | ||| || || ||| | ||||| | | | | | Sbjct 682 CTGCATCTTTCACGATCCCT-TGAATCTTCTCTTGGGTAAGCTTTTTCTTC-AGAAGGGT 625 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| | ||| || || || ||| ||| | ||||| |||||||| || || || || Sbjct 624 GTAGAGTAAACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGA 565 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||||||||| || || | | || ||||| || ||||| || || || ||| ||||| | Sbjct 564 GAATGTTAATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTC 506 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || ||||| || || || || | | | ||| | ||| ||| Sbjct 505 CGGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTTC----ANATT--CGG 452 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| |||| ||||| |||||||| ||||| | |||||| | ||||| Sbjct 451 CACCATCG---ATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTT 395 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGT----CCGAATCTCGTATGTATGTATCGATT 93376 | || || |||| ||| | | | | || ||| |||||| || || | Sbjct 394 CAATTGCACGGAATA----ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAG 339 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | |||||||||||||| ||||||| || || || || |||||||| ||||| || Sbjct 338 AGGAGAGAATACATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA 279 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||||| | || || | |||| || | | | ||||||||| || ||| Sbjct 278 CGGGCTTCAGAGACTTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATA 219 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC--ATCTT 93554 ||||| || || ||||| ||||| | | || | || ||||||| ||||| | || Sbjct 218 CCATCAGAAGCAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTT 159 Query 93555 TAAGCT-TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 ||| | | ||||||| | |||||||| ||||||||| |||||||| | ||||| || Sbjct 158 AAAGATGTCTCCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAG 99 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || ||||| ||||| |||||||| ||||| || | | |||||||| ||||| || Sbjct 98 GACGCTTCAGCTTTCTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556044024421600