Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5726 132 4e-26 seq14764 125 6e-24 seq5800 122 7e-23 seq6055 93.3 4e-14 seq16595 82.4 6e-11 >seq5726 Length=29179 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || ||||| |||| || ||||| | || || || || ||| || Sbjct 26914 AAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCC 26855 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || ||||||||||| || |||||||| || Sbjct 26854 TCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGAC 26795 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || || ||||| ||||| | || ||| ||| || || | |||||| Sbjct 26794 CAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTAC 26735 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| || | ||||| || | |||||| | || ||| Sbjct 26734 AACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGGT 26684 >seq14764 Length=84029 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || ||||| | |||||||| || ||||||| ||||| || | Sbjct 2982 AGATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTT 2923 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | ||||| || || |||||||| || || |||||||| |||| Sbjct 2922 CAGACACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATC 2863 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | |||||| | || || || || || || |||| ||| ||| || | |||| |||| Sbjct 2862 AGCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACA 2803 Query 22397 ACATTCAAAAAGAATCCAC 22415 ||||||||||||| || || Sbjct 2802 ACATTCAAAAAGAGTCAAC 2784 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || | || | || || || | | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||| ||||| ||||||||||| ||||| || ||||| Sbjct 2116 GACACCATTGATAATGTTAAAACAAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 2057 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || ||| ||| || | | ||||||||| Sbjct 2056 CAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAAC 1997 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||||| ||| | || |||| || ||| Sbjct 1996 ATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGGT 1949 >seq5800 Length=18681 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || ||| | ||||| ||||| | ||||| || || || | Sbjct 1731 AAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGT 1790 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | ||| | | || || || ||||||||||| || ||||| || || Sbjct 1791 TCCGATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGAC 1850 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | || || || || |||||| |||||||| ||||||| | |||| ||| Sbjct 1851 CAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTAC 1910 Query 22396 AACATTCAAAAAGAATCCAC 22415 || || || |||||||| || Sbjct 1911 AATATCCAGAAAGAATCAAC 1930 >seq6055 Length=32480 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 ||||| |||||||| || ||||| ||||| ||||| || || || |||| |||||||| Sbjct 17792 TTTGTCAAGATGCAGATCTTTGTGAAAACCTTAACAGGGAAGACCATCACCCTTGAAGTT 17851 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 ||| | | ||| ||| | ||| || |||| || |||||||||||||| ||||| Sbjct 17852 GAATCTAGCGACACCATCGACAATGTCAAGACTAAGATTCAAGACAAGGAAGGTAT 17907 >seq16595 Length=7721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || ||||| | || || ||||| | ||||| || || || | Sbjct 451 AGATGCAAATCTTCGTGAAAACCCTTACTGGCAAAACCATTACTCTCGAGGTCGAGAGTT 510 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | ||||| || || ||||||||||| || ||||| || |||| Sbjct 511 CTGACACCATTGACAACGTCAAAACCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATC 570 Query 22337 AACAACGTCTTATATTTGCCGGCAAACA 22364 | |||||| | || || || || ||||| Sbjct 571 AGCAACGTTTGATCTTCGCTGGAAAACA 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419127754857100