Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq18245 95.1 2e-14 >seq18245 Length=53001 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646 ||||| || ||||| | ||| | || | || ||||| || || ||| | ||| |||| Sbjct 28461 GATGGGCTAAAGCCCACCCAGAGAAAAGTTCTTTTTGCTGCTTTTAAGAGAAACTTGGTA 28520 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 ||||||| || || |||||||| |||||| || ||||| | |||| |||||||| Sbjct 28521 AAAGAAATCAAAGTTGCTCAGTTCAGTGGTTACGTCTCCGAGAAATCTGCTTACCATCAT 28580 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 ||||| || | || || | ||||| ||||||||||| | | | |||| || Sbjct 28581 GGTGAAGCCAGCATACAAAGTACAATTGTTGGCATGGCACAAAATTTTCTGGGTGCAAAT 28640 Query 218767 AACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||||| || || || || || || |||||||| Sbjct 28641 AACATCAATTTTTTGAAGCCTAAAGGACAGTTTGG 28675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026291530882940