Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5726 178 2e-39 seq14764 150 3e-31 seq5800 131 3e-25 seq16595 123 5e-23 seq6055 93.3 8e-14 >seq5726 Length=29179 Score = 178 bits (196), Expect = 2e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || || || || |||||||| ||||| | ||| || | |||||||| Sbjct 26703 ACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCTTCA 26762 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| ||||| | ||||||||| |||||||| |||||||||||||| Sbjct 26763 AGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 26822 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | |||||| ||||||||||| | ||||| || || | ||| |||||||| Sbjct 26823 ATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTC 26882 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || ||||| || ||||| ||||||||| || Sbjct 26883 CCTGTTAGGGTTTTCACGAAGATCTGCATTTTG 26915 >seq14764 Length=84029 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | || | ||| || |||||||| || ||||| || ||||| | Sbjct 1721 TCCACCACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1780 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| | |||||| || || || || | || || ||||| || || Sbjct 1781 CAAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGG 1840 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||||||||| || || | ||| ||| || |||||||| | || || Sbjct 1841 GATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAAC 1900 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct 1901 CTCCAAGGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | ||||| || || |||||||| || |||||||| ||||| | Sbjct 1950 CCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCA 2009 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || | || || || || || ||| Sbjct 2010 AGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 2069 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||||| || || || |||||||||| || || Sbjct 2070 ATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACC 2129 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || ||||| ||||| ||||||||||| || ||||| Sbjct 2130 TCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||||||||| ||||| || |||| || || | |||||||||| || Sbjct 2777 GTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTG 2836 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || | | ||| || || |||||||| ||||| |||||||| ||||| Sbjct 2837 CTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 2896 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | |||||| || |||||||||| || ||||| | ||||| || || || || Sbjct 2897 GGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGT 2956 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || ||||| Sbjct 2957 AAGGGTTTTCACGAAGATTTGCAT 2980 >seq5800 Length=18681 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || || | ||| | ||| || || || ||||| ||||| || || |||| Sbjct 1962 TTCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGG 1903 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | ||||| |||| ||| ||||| ||||| || | | |||||||| || | Sbjct 1902 CAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGG 1843 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||||||||| ||||| | ||| ||| || ||||| || | || | Sbjct 1842 GAATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGA 1783 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | || || ||||| || ||||| ||||||||||| || |||||| Sbjct 1782 CCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATT 1733 >seq16595 Length=7721 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| ||||||||||||||||| | Sbjct 1956 CCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCC 1897 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || || | | || ||||| || ||| Sbjct 1896 AAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGA 1837 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| || || ||||| |||| || || Sbjct 1836 ATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACC 1777 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| ||||| || || || | |||||||| |||||||||||| Sbjct 1776 TCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | || || || ||||| || | | ||| || || || ||||| |||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| | |||||| || |||||||| | || || || | || Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || ||||| || ||||| || ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq6055 Length=32480 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || |||||||||||||||||||| | |||||| ||||||||||| ||| ||||| || Sbjct 17907 ATACCTTCCTTGTCTTGAATCTTAGTCTTGACATTGTCGATGGTGTC-GCTAGATTCAAC 17849 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||||||||| || || || | ||| || || || |||||||| Sbjct 17848 TTCAAGGGTGATGGTCTTCCCTGTTAAGGTTTTCACAAAGATCTGCAT 17801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920270610344800